PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa002914

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

LBD

Protein Properties

Length: 194aa MW: 21128.8 Da PI: 8.7999

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-7238	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	140.5	5.6e-44	10	108	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC ++C++apyfp e+p+kf nvhklFGasnv+kll+++++++red+++sl yeAear+rdPvyG+vg+i+ lq+q++ l+++l+++k+ Lsa002914 10 PCAACKFLRRKCMPGCTFAPYFPPEDPQKFVNVHKLFGASNVTKLLSEVQPHQREDVVNSLSYEAEARVRDPVYGCVGIISILQRQIDVLQKDLDAAKA 108 7*********************************************************************************************99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.106	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.7E-43	10	107	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MASSSSCNSP CAACKFLRRK CMPGCTFAPY FPPEDPQKFV NVHKLFGASN VTKLLSEVQP 60 HQREDVVNSL SYEAEARVRD PVYGCVGIIS ILQRQIDVLQ KDLDAAKADL MRYARNATPV 120 MPHLSSIQPA TSQHRTIDHF SAKRIGGLYQ PPPPFPNPYA NRQWNSYNSF NSRENLSGGG 180 SGGAGGGVSG EGNI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-60	3	114	4	115	LOB family transfactor Ramosa2.1
5ly0_B	2e-60	3	114	4	115	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023764911.1	1e-144	LOB domain-containing protein 25-like
Swissprot	Q9FML4	2e-62	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	A0A2J6LB90	1e-143	A0A2J6LB90_LACSA; Uncharacterized protein
STRING	EOY20851	4e-76	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	2e-57	LBD family protein

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]