PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa002830
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family C3H
Protein Properties Length: 426aa    MW: 49660.1 Da    PI: 6.3633
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58687127PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185.2e-0691111526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                +C f+++ G+C+ G+ C+F Hg
  Lsa002830  91 PCYFYSK-GFCNKGEHCSFLHG 111
                7******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF156633.3E-10763No hitNo description
PROSITE profilePS5010310.174736IPR000571Zinc finger, CCCH-type
SMARTSM003560.31835IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.2723864IPR000571Zinc finger, CCCH-type
SMARTSM003562.34063IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.20286113IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-686111IPR000571Zinc finger, CCCH-type
SMARTSM003560.002187112IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-591114IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MDEEELQKRF TDCVYFLASP LTCKKGIECE YRHSEIARLN PRDCWYWLGG CCFNPDCAFR  60
HPPLEGLKEA YLESSNLNNA PALPVEKTNI PCYFYSKGFC NKGEHCSFLH GSADVSLALK  120
PSQPTSMVNN PAPCVEKLFT ESNTRSTPVN IHPTPSEPPK DDHTNNVRTP TQDPNPKQER  180
NTPDSQQERS ESPDMSNSLD LLEEFVQSGS DVFNDQSSGF DVVVEGESER YEYEQDVEYF  240
SVHEEEEGEE EPIEYDQTYP ELGNGIVKER CDVYECLDKG ESRKSIFYRL SFKKRNLQSE  300
APLFNGRKGH DLREHLKKRK DGFPFPYCFS QGYDRNFRRY PQRKAIPMNR YRKPQLMQQK  360
RRFKEKDTIF TGPKTLDEIK EQKKNTLQRK DDFQGSRHLN ERKYGFQGPR PFSEILKNKR  420
KFGSEX
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1306318RKGHDLREHLKKR
2311319LREHLKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023745178.10.0zinc finger CCCH domain-containing protein 17-like
TrEMBLA0A2J6JQV30.0A0A2J6JQV3_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.25e-06C3H family protein