PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa002750

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

NZZ/SPL

Protein Properties

Length: 285aa MW: 29964.8 Da PI: 9.1908

Description

NZZ/SPL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-16827	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NOZZLE	43.6	7e-14	27	172	43	187
NOZZLE 43 rgrkpgsktaqqkqkkptlrgmgvaklerfiieeekkkl.vvatvgdtssv.aaisntatrlpvpvdrgvvlqgfpsslgssrilcggvg........sg 132 r + gs +q+k+k+p rgmgv +ler +++e kk+ v + ++ a +s ++t +p p + gv + p+ + +l g+g + Lsa002750 27 RRKTKGSELTQKKNKQPQ-RGMGVEQLERLRLQERWKKMtEVPSLHHPFALpAFSSSSCTTVPNP-NTGVQF--RPAQGAAPAMLFHGIGihgtnlfsTA 122 555679******9996.****************75555555544426788899999944.567654..44443344444444431111111123 PP NOZZLE 133 qvmidpvispwgfvetsatthelssisnpqmynassnnrcdtcfkkkrldgdqnn 187 + ++dp + gf + +elssi+n + a s+ c c kkkr+ g n Lsa002750 123 EHVMDPSVN-VGFRFDNS--KELSSIPNYVVKCA-SDG-CGVCHKKKRIHGGSNS 172 345566554.57766666..8***876655.455.*********99864 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF08744	6.2E-10	27	172	IPR014855	Plant transcription factor NOZZLE

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MTTSMVMEMN LGENSGVKQS VNGGGGRRKT KGSELTQKKN KQPQRGMGVE QLERLRLQER 60 WKKMTEVPSL HHPFALPAFS SSSCTTVPNP NTGVQFRPAQ GAAPAMLFHG IGIHGTNLFS 120 TAEHVMDPSV NVGFRFDNSK ELSSIPNYVV KCASDGCGVC HKKKRIHGGS NSCSVNPFRN 180 LAGNNSVVEM IDAAKTRLCS GQVTEVISVY RNGGSAMTEY EFFPEKGGRG TTSKTCCGSG 240 SGSGSGGSVG GGTVALHGGD RSCVTAAITG NEEGSISSVD LSLKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023747330.1	0.0	uncharacterized protein LOC111895480
TrEMBL	A0A2J6JL60	0.0	A0A2J6JL60_LACSA; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27330.1	4e-07	sporocyteless (SPL)