PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa002652 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | SBP | ||||||||
Protein Properties | Length: 403aa MW: 44263.1 Da PI: 8.3245 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 133.7 | 6.2e-42 | 85 | 162 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +C v+gC+adls++keyhrrhkvCe+hsk+++v ++g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+ Lsa002652 85 TCLVDGCNADLSNCKEYHRRHKVCEIHSKTAQVSINGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 162 5**************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 32.163 | 83 | 160 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 1.7E-33 | 83 | 147 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.27E-38 | 84 | 164 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.5E-31 | 86 | 159 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
MDWNLKIPSW DFTEFEQGTI PNIDSTSGSS SYGGQGIKGN FCVDLKLGQV IDSGNELKST 60 SKMALSPSAS SKRARPINNT IPAATCLVDG CNADLSNCKE YHRRHKVCEI HSKTAQVSIN 120 GQKQRFCQQC SRFHSLEEFD EGKRSCRKRL DGHNRRRRKP QPDTSRSASL FSGHQGATML 180 QFSSPHVYQT TSLTNHLWTT MVKSEEQTYS TRHSTMAHKH NPFPESSLGG KKLPGKQQFS 240 LFHGSHLKLN HQTSPPKVSQ QSQSQTQPQT VVTFEGNSSG SYEKLFCDGY PPPAAAARVV 300 QPVVQSSDCA LSLLSSSPSQ TSCTTLSHVM HPSNSYGAPP NPMDPGAGAG YGGLESIMDP 360 NGNGNDCDGM IQMGIHHHHH HQHQHQHASP DNGAPQTLPF YWE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-29 | 86 | 159 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 142 | 159 | KRSCRKRLDGHNRRRRKP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023741902.1 | 0.0 | squamosa promoter-binding-like protein 13A | ||||
Refseq | XP_023741903.1 | 0.0 | squamosa promoter-binding-like protein 13A | ||||
TrEMBL | A0A2J6JXU5 | 0.0 | A0A2J6JXU5_LACSA; Uncharacterized protein | ||||
STRING | EMJ10405 | 1e-99 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 1e-57 | SBP family protein |