PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa002648
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ERF
Protein Properties Length: 252aa    MW: 28172.8 Da    PI: 5.0549
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-29561PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63.2e-1892142255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 y+GVr+++ +g+++AeIrd +    +  r++lg+f++ae Aa a+++a+ +++g
  Lsa002648  92 SYRGVRRRP-WGKFAAEIRDSTR---HgVRVWLGTFDSAEAAAMAYDQAAFSMRG 142
                69*******.**********422...25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.27E-1991152No hitNo description
SMARTSM003802.3E-3692156IPR001471AP2/ERF domain
PfamPF008471.8E-1392142IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-3092150IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-2292151IPR016177DNA-binding domain
PROSITE profilePS5103223.28892150IPR001471AP2/ERF domain
PRINTSPR003673.4E-1093104IPR001471AP2/ERF domain
PRINTSPR003673.4E-10116132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MAETSYFQHF PTTESHQNHP THGDESPSST XNSLHINLND TEDMLLFDML AANGGASITD  60
QSSESNSSTA GVVKEEEVTS ESKPDKPQKE KSYRGVRRRP WGKFAAEIRD STRHGVRVWL  120
GTFDSAEAAA MAYDQAAFSM RGTAAILNFP VDRVKESLQE MKYGFEEGCS PVIALKKRHS  180
LRKKPVSRKI KQVVEQNTVV FEDLGADYLE QLLTSSENSX DDFLVNPDPA FKVQVVETFQ  240
DSRDVQNLNL TL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-30931501572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023754086.11e-133ethylene-responsive transcription factor 1B-like
SwissprotA0A3Q7I5Y91e-70ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A2J6M0071e-132A0A2J6M007_LACSA; Uncharacterized protein
STRINGVIT_07s0005g03260.t016e-77(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.15e-58ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]