PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa002628

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

bZIP

Protein Properties

Length: 358aa MW: 40547.8 Da PI: 7.874

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58688516	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-30380	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	21.7	4.4e-07	224	262	17	55
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 A+rsR RK+++i+eLe+ v++L+a ++ ele l+++ Lsa002628 224 AQRSRVRKLQYIAELERNVQALQADGSEVSAELEFLNQQ 262 89***********************99999999988876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	0.0028	213	272	IPR004827	Basic-leucine zipper domain
CDD	cd14703	8.09E-15	215	262	No hit	No description
Gene3D	G3DSA:1.20.5.170	7.3E-5	224	264	No hit	No description
SuperFamily	SSF57959	4.5E-5	224	266	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MANSKGPSTT RNMVYNGRHS LLPPKCPFPT TPPSYSDYIS NPAIGPKGIP KYRDINSHHQ 60 RASSESLLIE EQPSWLDELL NEPETPVQRG HRRSSSDSFT YLEAANSVNV EYGVKDEHKI 120 RNLTSVPSWG SHDFDFYKDA RSVPNNPLMN MNPKSRAWDS PSPQNGLQRS VSLGASNEIR 180 GIVSSIREKQ DGGESGPHDS SEDANHERKD SSETDTKRAK QQFAQRSRVR KLQYIAELER 240 NVQALQADGS EVSAELEFLN QQSLILSMEN KALKQRLENL AQEQLIKCLE HEVLERELGR 300 LRALYHHQQQ PQPPQSHHRR TASRERLDSQ FANLSLKNTD STSVHNNPVS SHQQPPRI

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MANSKGPSTT RNMVYNGRHS LLPPKCPFPT TPPSYSDYIS NPAIGPKGIP KYRDINSHHQ  60
RASSESLLIE EQPSWLDELL NEPETPVQRG HRRSSSDSFT YLEAANSVNV EYGVKDEHKI  120
RNLTSVPSWG SHDFDFYKDA RSVPNNPLMN MNPKSRAWDS PSPQNGLQRS VSLGASNEIR  180
GIVSSIREKQ DGGESGPHDS SEDANHERKD SSETDTKRAK QQFAQRSRVR KLQYIAELER  240
NVQALQADGS EVSAELEFLN QQSLILSMEN KALKQRLENL AQEQLIKCLE HEVLERELGR  300
LRALYHHQQQ PQPPQSHHRR TASRERLDSQ FANLSLKNTD STSVHNNPVS SHQQPPRI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023740135.1	0.0	uncharacterized protein At4g06598-like
TrEMBL	A0A2J6K1J4	0.0	A0A2J6K1J4_LACSA; Uncharacterized protein
STRING	cassava4.1_009724m	1e-144	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58110.2	1e-86	bZIP family protein