PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa002540
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ERF
Protein Properties Length: 217aa    MW: 24345.9 Da    PI: 6.6292
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-38161PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.2e-203484155
        AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               ++y+GVr ++ +gr++AeIrd ++    ++r++lg+f++ae+Aa+a++aa+++l+g
  Lsa002540 34 PRYRGVRKRP-WGRFAAEIRDpWK----KARVWLGTFDSAEDAARAYDAAARSLRG 84
               68********.**********883....5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.07E-203492No hitNo description
PfamPF008471.5E-133484IPR001471AP2/ERF domain
PROSITE profilePS5103223.6963592IPR001471AP2/ERF domain
SMARTSM003803.4E-363598IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-313592IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-223593IPR016177DNA-binding domain
PRINTSPR003671.2E-103647IPR001471AP2/ERF domain
PRINTSPR003671.2E-105874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MVMRRGSRAK AAVGEPIGSR PEEMVAQQPE TNEPRYRGVR KRPWGRFAAE IRDPWKKARV  60
WLGTFDSAED AARAYDAAAR SLRGSKAKTN FPFFPSNEIH DHPEDDQTKH HQQTFYQSRP  120
TMSSLSSTVE STSGPRPSNP VKTHHRLKPP PVPQDDDDCH SNCDSSSSVV DDYYYDGDLS  180
SSSRKPLPFD LNLPPPLDEI GFSSNPNDDL YVTALCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-223693361ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A8e-223693664ATERF1
3gcc_A8e-223693664ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023756423.11e-161ethylene-responsive transcription factor 3-like
SwissprotO803394e-40ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLA0A2J6LUG21e-160A0A2J6LUG2_LACSA; Uncharacterized protein
STRINGXP_002531192.13e-52(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.17e-26ethylene responsive element binding factor 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]