PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa002454
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MIKC_MADS
Protein Properties Length: 196aa    MW: 23009.3 Da    PI: 7.0461
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58679822PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-1757PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF885.2e-28959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krien+snrqvt+skR+ngi+KKA+E+ vLCda+v+++i +s+gk+yey+s
  Lsa002454  9 KRIENTSNRQVTYSKRKNGIIKKAKEITVLCDANVSLVICGSSGKMYEYCS 59
               79***********************************************96 PP
2K-box78.61.5e-2671161195
      K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                yq+ sg++l++ak+e+lq+e++++kke+e++q e+Rhl+Ged++sL+++eL   e++Le++l++iR+kK+e+ +     ++k e+ l+eenk L 
  Lsa002454  71 YQRLSGNKLWDAKHENLQNEIDRIKKENESMQIELRHLKGEDITSLNYEELIAYEDALENGLTNIREKKDEIPKI----MRKHEQVLEEENKHLM 161
                7899******************************************************************99755....6666666666666654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.894161IPR002100Transcription factor, MADS-box
CDDcd002652.10E-38280No hitNo description
SuperFamilySSF554557.98E-36296IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-27323IPR002100Transcription factor, MADS-box
PfamPF003191.7E-211057IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-273859IPR002100Transcription factor, MADS-box
PfamPF014862.8E-1882161IPR002487Transcription factor, K-box
PROSITE profilePS5129714.584170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MGRGKIEIKR IENTSNRQVT YSKRKNGIIK KAKEITVLCD ANVSLVICGS SGKMYEYCSP  60
KTNLIDMLDR YQRLSGNKLW DAKHENLQNE IDRIKKENES MQIELRHLKG EDITSLNYEE  120
LIAYEDALEN GLTNIREKKD EIPKIMRKHE QVLEEENKHL MYLVQQSEMA TMGDYQGQEP  180
FSFRVQPMQP NLHERM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-16175173MEF2 CHIMERA
6byy_B3e-16175173MEF2 CHIMERA
6byy_C3e-16175173MEF2 CHIMERA
6byy_D3e-16175173MEF2 CHIMERA
6bz1_A3e-16175173MEF2 CHIMERA
6bz1_B3e-16175173MEF2 CHIMERA
6bz1_C3e-16175173MEF2 CHIMERA
6bz1_D3e-16175173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023762568.11e-144floral homeotic protein PMADS 2-like
SwissprotQ074745e-98MADS2_PETHY; Floral homeotic protein PMADS 2
TrEMBLA0A2J6LGI91e-143A0A2J6LGI9_LACSA; Uncharacterized protein
STRINGXP_009803901.11e-99(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.17e-85MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]
  2. Kush A,Brunelle A,Shevell D,Chua NH
    The cDNA sequence of two MADS box proteins in Petunia.
    Plant Physiol., 1993. 102(3): p. 1051-2
    [PMID:8278527]