PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lsa002443 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
|
||||||||
Family | ZF-HD | ||||||||
Protein Properties | Length: 202aa MW: 21705.8 Da PI: 7.0837 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 109.6 | 1.7e-34 | 45 | 102 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 v+YkeClkNhAas+Ggha+DGCgEfmps++ + +++++lkCaACgCHRnFHRr++++ Lsa002443 45 VVVYKECLKNHAASIGGHALDGCGEFMPSPTCTpTDPKSLKCAACGCHRNFHRRNPST 102 689****************************999********************9876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 2.0E-22 | 46 | 99 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 6.4E-29 | 46 | 100 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.856 | 48 | 99 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.5E-31 | 48 | 99 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 202 aa Download sequence Send to blast |
MDLKHPTTTI PEPESDTPPR SQSIKKLLSF QNGKPHHHHP PPSTVVVYKE CLKNHAASIG 60 GHALDGCGEF MPSPTCTPTD PKSLKCAACG CHRNFHRRNP STTSLPPSPE TTSLISIAPT 120 KPPPPPPPPP TPPSPPPQPT NYAFGGHLLL SLSTAADQTH TTATPMAIMT SXKEAVPDEI 180 QSGSERKDDD XCRXIRVEDA EM |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023731362.1 | 9e-80 | zinc-finger homeodomain protein 9-like | ||||
Swissprot | Q9LXG0 | 2e-34 | ZHD8_ARATH; Zinc-finger homeodomain protein 8 | ||||
TrEMBL | A0A2J6KL33 | 2e-78 | A0A2J6KL33_LACSA; Uncharacterized protein | ||||
STRING | A0A087GV62 | 3e-37 | (Arabis alpina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G15210.1 | 3e-32 | homeobox protein 30 |
Publications ? help Back to Top | |||
---|---|---|---|
|