PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa002434
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family HD-ZIP
Protein Properties Length: 844aa    MW: 92414.7 Da    PI: 6.4626
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58690889PU_unrefUnigeneView CDS
PUT-187a-Lactuca_sativa-47806PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-181775357
               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
               k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Lsa002434 17 KYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75
               5679*****************************************************97 PP
2START167.87.3e-531633712205
                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXT CS
      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelq 99 
                +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d+  W ++++++++l+v+ ++  g+++l +++l+
  Lsa002434 163 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDRTSWFRDCRAVDVLDVLPTAngGTIELLYMQLY 261
                789*******************************************************.8899999998****************9999*********** PP

                TXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHH CS
      START 100 alsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegakt 195
                a+++l+  Rdf+ +Ry+   ++g++v++++S++++q+ p     +++vRae+lpSg+li+p+++g+s +++v+h++l+ ++++++lr+l++s ++ ++kt
  Lsa002434 262 APTTLATaRDFWLLRYTSVTEDGSLVVCERSLTNTQNGPCipcVPNFVRAEMLPSGYLIRPCEGGGSIIHIVDHMNLEPWTVPEVLRPLYESPTVLAQKT 361
                ***************************************99999******************************************************** PP

                HHHHTXXXXX CS
      START 196 wvatlqrqce 205
                ++ +l+++++
  Lsa002434 362 TMMALRQLRQ 371
                *****99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.4181276IPR001356Homeobox domain
SMARTSM003891.2E-151480IPR001356Homeobox domain
CDDcd000869.42E-171777No hitNo description
SuperFamilySSF466898.13E-171779IPR009057Homeodomain-like
PfamPF000463.0E-161875IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-181975IPR009057Homeodomain-like
CDDcd146861.38E-669108No hitNo description
PROSITE profilePS5084825.388153381IPR002913START domain
CDDcd088752.15E-76157373No hitNo description
Gene3DG3DSA:3.30.530.202.0E-21162367IPR023393START-like domain
SuperFamilySSF559615.77E-36162374No hitNo description
SMARTSM002343.0E-37162372IPR002913START domain
PfamPF018522.5E-50163371IPR002913START domain
PfamPF086701.7E-50701843IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 844 aa     Download sequence    Send to blast
MAMSCKDGKG AIMDNGKYVR YTPEQVEALE RLYHECPKPS SIRRQQLIRE CPILSNIEPK  60
QIKVWFQNRR CREKQRKEAS RLQSVNRKLT AMNKLLMEEN DRLQKQVSHL VYENGCFRQH  120
TQNTTTVATK DTSCESVVSS GQQRHLTPQH PPRDASPAGL LSIAEETLTE FLSKATGTAV  180
EWVQMPGMKP GPDSIGIVAI SHGCTGVAAR ACGLVGLEPT RVAEILKDRT SWFRDCRAVD  240
VLDVLPTANG GTIELLYMQL YAPTTLATAR DFWLLRYTSV TEDGSLVVCE RSLTNTQNGP  300
CIPCVPNFVR AEMLPSGYLI RPCEGGGSII HIVDHMNLEP WTVPEVLRPL YESPTVLAQK  360
TTMMALRQLR QIAQEVSQAS TPNWGRRPAA LRSLSQRLSR GFNEAVNGFT DEGWSLMGND  420
GSDDVTILVN SSPEKLMGLN LSFSNGYPSV NTAILCAKAS MLLQNVPPAL LLRFLREHRS  480
EWADNNVDAY AASAVKLGPC SLPGSTRLGS FGGQVILPLA HTIEHEELLE VIKLEGVSNC  540
PEDALMSRDM FLLQLCSGMD ENAVGMCSEL VFAPIDASFA DDAPLLASGF RIIPLDSGKE  600
ASSPNRTLDL ASALEVKGSG NKLSGDRNVG GGGGSARSVM TIAFEFAFES HMQESVVAMA  660
RQYVRSIISS VQRVASALSP SHLNPNGGGI QSTLGNPEAH TLARWISHSY RGYLAVELFK  720
TVGEGSESIL KSLWHHSDAI VCCSMKALPV FTFANQAGLD MLETTLVALQ DISLEKILDE  780
HGRKGLCAEF PQIMQQGFAC LQGGICVSSM GRPVSYERAV AWKVLNDDDN AHCICFMFIN  840
WSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023761873.10.0homeobox-leucine zipper protein ATHB-15-like
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A2J6LI630.0A0A2J6LI63_LACSA; Uncharacterized protein
STRINGVIT_09s0002g03740.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]