PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa002353
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ZF-HD
Protein Properties Length: 365aa    MW: 39644.9 Da    PI: 8.4301
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58684116PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-21993PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer103.61.3e-3262119359
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                   v+Yke lkNhAa++Ggha+DGCgEfmps++++ + +++lkCaACgCHRnFHRre++e
    Lsa002353  62 VVTYKESLKNHAAAMGGHAIDGCGEFMPSPTSSpSYPTSLKCAACGCHRNFHRREPDE 119
                  589****************************99999*******************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-1946116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.6E-2663117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.1E-2964116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.3865116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.55E-17212284IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.7E-30213284IPR009057Homeodomain-like
TIGRFAMsTIGR015655.7E-26223279IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MEIPTPPPPT TIVAAAATVK TPDPDSETPQ SNNFTKQLTP PLTNGVLKRH KPFHHLQPPP  60
VVVTYKESLK NHAAAMGGHA IDGCGEFMPS PTSSPSYPTS LKCAACGCHR NFHRREPDES  120
LFPSPHNPPI QHVIEYQPHH RHHPPPPQPI PPPAGGANSS SPGNSPSPPP ISSSYYPSAP  180
HMLLALSAGL TAPPAENNHG NHNPSIPTTP GSAVASGSNP NGKKRFRTKF TQDQKEKMHE  240
IAERVGWKMQ KRDEELINGF CNQIGVDRSV FKVWMHNNKT TFGKPKDFTN NNGNNSSGEG  300
IDFIISRNNH HHDTGNNHHL DTGNNHHLDS GNNRHDIDHH LHLHNNGSFN TGGNVICTKG  360
SSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-192242811875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023737332.10.0zinc-finger homeodomain protein 9-like
SwissprotQ9LHF01e-59ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBLA0A2J6K7I70.0A0A2J6K7I7_LACSA; Uncharacterized protein
STRINGXP_009620291.13e-87(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.13e-57homeobox protein 34
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]