PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Lsa002213 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | ZF-HD | ||||||||||||
Protein Properties | Length: 286aa MW: 31402.2 Da PI: 8.4115 | ||||||||||||
Description | ZF-HD family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 102.3 | 3.1e-32 | 65 | 117 | 4 | 57 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 rY+eClkNhAa++Gg+ +DGCgEfmps g++gt +alkCaAC+CHRnFHR+e Lsa002213 65 PRYRECLKNHAANIGGNITDGCGEFMPS-GDDGTLEALKCAACNCHRNFHRKEY 117 69*************************9.999********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01566 | 7.4E-30 | 66 | 116 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-21 | 66 | 116 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.7E-29 | 66 | 116 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.1 | 67 | 116 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 2.69E-18 | 212 | 275 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.5E-30 | 213 | 275 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.6E-28 | 214 | 270 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MALSGSEKEI GMQTSSPYNN NHLIRESSSE TVDHGLDPDR FPGTGASVTP ISVGSKLLKS 60 PLQMPRYREC LKNHAANIGG NITDGCGEFM PSGDDGTLEA LKCAACNCHR NFHRKEYPTT 120 SPAVGPFLQL PPPLPSPSPS PSFHHHHHHH RTPPAISLHH NHNHHHHPNW ASSINAPPVK 180 MAFAGSVGGA ATESSSEELN FTAGAVAPPY GVAKKRFRTK FTQDQKEKML EFAEKVGWRI 240 PREDDPEVQR FCAEVGVKRQ VLKVWMHNNK ATSGKKLLQD SNESIN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 8e-25 | 215 | 270 | 18 | 73 | ZF-HD homeobox family protein |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023732596.1 | 0.0 | zinc-finger homeodomain protein 2-like isoform X1 | ||||
TrEMBL | A0A2J6KIE0 | 0.0 | A0A2J6KIE0_LACSA; Uncharacterized protein | ||||
STRING | XP_009763792.1 | 5e-79 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 2e-57 | homeobox protein 31 |