PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa002196
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family GATA
Protein Properties Length: 322aa    MW: 35207.3 Da    PI: 6.7789
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-31175PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.29.3e-18243277135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                Cs+C + kTp+WR gp g ktLCnaCG++y++ +l
  Lsa002196 243 CSHCLVQKTPQWRAGPLGAKTLCNACGVRYKSGRL 277
                *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.2E-8315316IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.279237273IPR000679Zinc finger, GATA-type
SMARTSM004011.8E-15237291IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-14238300No hitNo description
Gene3DG3DSA:3.30.50.106.4E-14241275IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.98E-13242299No hitNo description
PROSITE patternPS003440243268IPR000679Zinc finger, GATA-type
PfamPF003201.1E-15243277IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MECVEGALKS SFIAVKPNNH HHPQSFSDDF CAITGVPGDD FFVDGLLDFS DDGDFEEEND  60
DTHVLLHDNK NDKPLSISPV KKADIGHTEA FSIPESDLCL PVDDVADLEW VSHFVDDSFS  120
GGYSLTCPAG KFPEKKSEPE TETFITVNVN VKPSFTTPVL TKARSKRTRT GGRVWSLGTT  180
PLTDSSTSSS SSSSCTSNPW LFFHDSAQTA ESILGKPPVK RQKKRKTHPP AADAGGGSQP  240
RRCSHCLVQK TPQWRAGPLG AKTLCNACGV RYKSGRLLPE YRPACSPTFS SEVHSNNHRK  300
VLEMRQKKEA AEPGLPFPVQ SF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223227KRKTH
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023749186.10.0GATA transcription factor 6-like
SwissprotQ9FH577e-58GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A2J6M9E40.0A0A2J6M9E4_LACSA; GATA transcription factor
STRINGXP_009761911.13e-82(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.22e-58GATA transcription factor 5