PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa002178
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bZIP
Protein Properties Length: 311aa    MW: 35070.3 Da    PI: 8.6267
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58688248PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-21434PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_145.91.2e-14240282547
                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 
                +r++r++kNRe+A rsR+RK+a++ eLe+k+  Le+eN++L+ 
  Lsa002178 240 RRQKRMIKNRESAARSRARKQAYTHELENKISRLEEENERLRR 282
                79***************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.2E-12236309IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.576238283IPR004827Basic-leucine zipper domain
PfamPF001704.2E-12240283IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.0E-10240285No hitNo description
Gene3DG3DSA:1.20.5.1701.8E-13240284No hitNo description
CDDcd147077.90E-24240285No hitNo description
PROSITE patternPS000360243258IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MGSNGGTQKP VFDGLSRQGS LYNLTLDEVQ QQLGDLGKPF SSMNLDEFLK NVWSAEANQG  60
INNGSSPDYS ELTQLASASS LPRQLSLTFT KDLTKKTVDE VWQDIQQDQN KKKTNGSDSN  120
IDNTSSCKRQ ATLGEMTLED FLVKAGIVSE SSSPGKKNHE QNLDPPEAQW MNYQIAQIPQ  180
QHVVMSSHYQ VPQPLPLNVI DTGYLETRMT MSPTPLMGSV SEFGRKRVAS GEVIEKTVER  240
RQKRMIKNRE SAARSRARKQ AYTHELENKI SRLEEENERL RRQKEVETVL PCVPPPQQPK  300
YQLRRTTSAP F
Functional Description ? help Back to Top
Source Description
UniProtBinds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023731586.10.0ABSCISIC ACID-INSENSITIVE 5-like protein 2
SwissprotQ9LES34e-89AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBLA0A2J6KKJ70.0A0A2J6KKJ7_LACSA; Uncharacterized protein
STRINGXP_010251669.11e-113(Nelumbo nucifera)
Publications ? help Back to Top
  1. Kim H, et al.
    ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis.
    Plant Mol. Biol., 2016. 90(3): p. 303-15
    [PMID:26667153]
  2. Song C,Kim T,Chung WS,Lim CO
    The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions.
    Mol. Cells, 2017. 40(8): p. 577-586
    [PMID:28756655]