PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa002065
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family AP2
Protein Properties Length: 276aa    MW: 30763.7 Da    PI: 7.1978
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58682559PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.7e-17160209155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Lsa002065 160 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 209
                78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.4E-9160209IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-16160218IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-17161218IPR001471AP2/ERF domain
CDDcd000187.12E-12161216No hitNo description
PROSITE profilePS5103217.899161217IPR001471AP2/ERF domain
SMARTSM003803.2E-32161223IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MLDLNLNFVN EDETTTFRDV EESGTSNSSV VNADGVNSSN AGEGDDDSSS AGGAGESFSC  60
FNFDILKVGD AGVQSGNTYD EDRRSQNLTQ SEFVTRHLFP MSHGHGGGEE SGQQSNSLLL  120
RPNTNELQEM RLVQVPQQKP TVQPNLAGKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD  180
CGKQVYLGGF DTAHAAARAY DRAAIKFRGV DADINFSLSD YEDDMNQMKN FSKEEFVHIL  240
RRQSTGFSRG SSKYRGVTLH KCGRWEARMG QFLGKK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023734721.10.0ethylene-responsive transcription factor RAP2-7-like isoform X2
RefseqXP_023734725.10.0ethylene-responsive transcription factor RAP2-7-like isoform X6
SwissprotQ9SK034e-74RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A2J6KDF10.0A0A2J6KDF1_LACSA; Uncharacterized protein
STRINGSolyc06g075510.2.12e-92(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.21e-70related to AP2.7