PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa001912

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

TCP

Protein Properties

Length: 323aa MW: 34335.7 Da PI: 8.4442

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-7371	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	112	8.3e-35	75	165	5	89
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.......k 89 ++ ++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ a++ai+e+tgt++ +a ++ + + + ss+ + Lsa001912 75 RRASKDRHTKVEGRGRRIRMPAVCAARIFQLTRELGHKSDGETIRWLLEHAEAAIIEATGTGTVPAIAVnV--NGTLKIPTTSSNgkewedgR 165 6789*********************************************************9998855531..11111111111111232222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	7.9E-29	77	155	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.094	78	132	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MATFDKENME SEEEDVKVLS KSDPLLGDPP VYTITPIPQR PPPLMEVTVF KEEPTENDSK 60 GSTPVSKQML VAQPRRASKD RHTKVEGRGR RIRMPAVCAA RIFQLTRELG HKSDGETIRW 120 LLEHAEAAII EATGTGTVPA IAVNVNGTLK IPTTSSNGKE WEDGRKRRKR GSEFYDVNDS 180 SSSNFAPVAP VAPQGLVPLW TNAGMHGGAF FMIPQSLPGG GGASSAQLWA IPTGLNIGAR 240 PIPSYVSAIQ AGGGGGGGGG GVETPSESVS NNSESEDKSG KVLTKLAPSS SSVNTSQMIR 300 NLSLKIYEKR ELQLMVGSSN PSS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023754782.1	0.0	transcription factor TCP19-like
Swissprot	Q9LT89	2e-62	TCP19_ARATH; Transcription factor TCP19
TrEMBL	A0A2J6LY55	0.0	A0A2J6LY55_LACSA; Uncharacterized protein
STRING	PGSC0003DMT400062327	4e-93	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	1e-53	TCP family protein