PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa001821
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family C3H
Protein Properties Length: 629aa    MW: 70478 Da    PI: 4.2876
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58663251PU_unrefUnigeneView CDS
gnl|UG|Lsa#S58692262PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.41.9e-06288306625
                -SGGGGTS--TTTTT-SS-S CS
    zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                C ffa+ G+C  G +C+F H
  Lsa001821 288 CEFFAK-GWCIKGKSCRFLH 306
                ******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF161311.7E-7269313IPR032297Torus domain
SMARTSM003560.0059282308IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6282306IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.779282309IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
XASAAAAGKS PIASDSDEYE YEYEYEEIEV EEEVEVEVEE EVSDEEVNEE EDEEEVEEKG  60
EDILPTIIDG EDHKKSAHHS VVKIDEEEEE EEEEEEEEEE EEEEEEEEEE EPEEQEEVEE  120
KREDISPPID DGDHEKGKTT TVDDGGMLYT DNDNKPSQSD HGGITTSSVN TSNPVGVSVS  180
AEVVKVSGES VIQVPNDDDD KFPPEKGSKE SNEVIQSPLS EKETKETNEG NSNFPPSSEK  240
ETKGTNDQDM DDKHQKQPVR LDVPLRRPRS SSPVTKTKEG NKRQVLVCEF FAKGWCIKGK  300
SCRFLHIKES KEDKQCNSQN TPSISAQMTK IPPLNHSSVW TSNSLLFSSS SSSWNNPDSF  360
PTMNDYKSGS ETKHLYQNQN QNQDKVLSGD SHSTRFYKYD WEPSKPFRSM FLLSQGLSPS  420
TLYDPIRDSI DPPDYGVGVS KFSSSCQGPS TSTTHSPKNI NPPVKGTPHD IDIDNASERH  480
SVASHDKDTS SNKVNVEKGN EHMHTSHVYN GDMTEASEAN DGPTKREIKE TSEAKGDEVV  540
MQRESKALRH FRGALIEFVK EIVKPAWREG NLSKDAHKVV VKKVVDKVLS TLSSENIPST  600
EDATDFYLSS CQQKLVKLVE GYIKKYGKS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023751191.10.0protein FRIGIDA-ESSENTIAL 1-like
TrEMBLA0A2J6M5Y90.0A0A2J6M5Y9_LACSA; Uncharacterized protein