PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa001817

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

GRF

Protein Properties

Length: 342aa MW: 36876.6 Da PI: 7.2093

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-19030	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	72.4	5.1e-23	157	201	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+ep+rCrRtDGKkWRC ++v +++k+CErH h+ rsrsrk++++ Lsa001817 157 DPEPWRCRRTDGKKWRCAKDVGPNQKYCERHAHKTRSRSRKPVDT 201 79****************************************986 PP
2	QLQ	51.5	3e-18	106	138	2	34
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqa 34 FTa+Q+q+L++Q l+yKy++a+ P+Pp+Ll++ Lsa001817 106 LFTATQWQELERQTLIYKYIMASIPIPPQLLLP 138 5******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	6	1	24	No hit	No description
SMART	SM00951	1.9E-9	105	141	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	19.502	106	141	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	8.7E-13	107	138	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.151	157	201	IPR014977	WRC domain
Pfam	PF08879	1.6E-18	158	199	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MRNDSNRTSG AAGGGGGGGG GGGCGGAVSP LECDVGLGLN SEPSYPCKKM SLININQYRH 60 HDFGGVYGNN GSQQFVHQGN PTNQLASGIS FKSITDGVVG ASGKVLFTAT QWQELERQTL 120 IYKYIMASIP IPPQLLLPSS TQSNRTSTGI RFSNGSDPEP WRCRRTDGKK WRCAKDVGPN 180 QKYCERHAHK TRSRSRKPVD TTHNPTATSS NQQTRCHEWF IKSSETPLSQ SKMDDCSLSL 240 SMQSSGNVNG NGVEFGDQES FQMAFRMLEG EEESVGDGFR SNHQWLNQAA WEGSNQGSNP 300 SMPGGPLGEA LCLGMSGVDH MGPNVASSYG SYEGSDDRSW FL

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MRNDSNRTSG AAGGGGGGGG GGGCGGAVSP LECDVGLGLN SEPSYPCKKM SLININQYRH  60
HDFGGVYGNN GSQQFVHQGN PTNQLASGIS FKSITDGVVG ASGKVLFTAT QWQELERQTL  120
IYKYIMASIP IPPQLLLPSS TQSNRTSTGI RFSNGSDPEP WRCRRTDGKK WRCAKDVGPN  180
QKYCERHAHK TRSRSRKPVD TTHNPTATSS NQQTRCHEWF IKSSETPLSQ SKMDDCSLSL  240
SMQSSGNVNG NGVEFGDQES FQMAFRMLEG EEESVGDGFR SNHQWLNQAA WEGSNQGSNP  300
SMPGGPLGEA LCLGMSGVDH MGPNVASSYG SYEGSDDRSW FL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023742400.1	0.0	growth-regulating factor 8-like isoform X1
TrEMBL	A0A2J6JWK5	0.0	A0A2J6JWK5_LACSA; Uncharacterized protein