PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa001604

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

bHLH

Protein Properties

Length: 341aa MW: 37817.1 Da PI: 7.6191

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-46420	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.1	1.3e-12	274	319	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + +++L +Av+YIk+Lq Lsa001604 274 SIAERVRRTRISERMRKLQELVPQM----DKQTNTSDMLDLAVDYIKDLQ 319 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.697	268	318	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.58E-15	271	327	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.92E-12	272	321	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.6E-14	273	329	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.9E-12	274	324	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-9	274	319	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MGCSGFGXAP SSVLQSFVND IEKPRDVNDG LNYNLVSQSY QDLQEEVDLK PNLITGFSLN 60 PQLQSSHYPR QSTSQTSMDS TNSYSREAHL SSSIAMSIDN LSQQSKMGSS LLRQNSSPAG 120 LFSHLNHPNG YGSMRGTIGS YRLGNNVNNN GDLISSSSRL KRQMSSSSLG MLPRISEIEP 180 VTVELGVLND ASDYPFGSWE HDSSPFIDNF TGLKREIETR NGDHLGNQIP MLSHHLSLPK 240 TSIEMAAVEK LLHFQDSVPC KIRAKRGCAT HPRSIAERVR RTRISERMRK LQELVPQMDK 300 QTNTSDMLDL AVDYIKDLQE QYKVLKDGRA NCVCSARSGP T

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023730920.1	0.0	transcription factor bHLH130-like
Swissprot	Q66GR3	3e-82	BH130_ARATH; Transcription factor bHLH130
TrEMBL	A0A2J6KM36	0.0	A0A2J6KM36_LACSA; Uncharacterized protein
STRING	PGSC0003DMT400021062	1e-98	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	1e-82	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]