PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa001317
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family C3H
Protein Properties Length: 276aa    MW: 28996.4 Da    PI: 10.6054
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S32125861PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.76.2e-063053225
               -S---SGGGGTS--TTTTT-SS-S CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
               k ++C+ f+ +  C++G++C+F H
  Lsa001317 30 KSKPCMKFFSMDGCPFGENCHFLH 53
               678999999999************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.4462856IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-62954IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-63053IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.19E-14146227IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.104.9E-15156225IPR004088K Homology domain, type 1
SMARTSM003221.8E-9156226IPR004087K Homology domain
PROSITE profilePS5008413.774157221IPR004088K Homology domain, type 1
CDDcd001057.61E-13159221No hitNo description
PfamPF000131.5E-10159223IPR004088K Homology domain, type 1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MDARKRGRPE AKANGGAKKF KPESKLVGSK SKPCMKFFSM DGCPFGENCH FLHFFPGGYN  60
AVAQMMNLPP LPLPPHPPPP PPKTPLLNPK SATNTTLQKA VHSATNVTLP MVNGSSVNPS  120
PNLTTTPKPP LPPTARFTAP PPQQLPPPGI ASSFGASATA KISIDASLAG TIIGKGGVNS  180
KQICWKTGAK LSIRDHESDV SLKNIELEGT FDQIKEASAM VSELILSASL QTAGGGGPPP  240
GVHHGPLSSV SNRKLNCVRI LQRGLVPWVT SVTLLX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023744312.11e-112zinc finger CCCH domain-containing protein 14-like isoform X1
SwissprotQ7F8R02e-63C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2J6JSA41e-111A0A2J6JSA4_LACSA; Uncharacterized protein
STRINGXP_004136573.14e-73(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.14e-54C3H family protein