PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa001275

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

bZIP

Protein Properties

Length: 518aa MW: 57824.6 Da PI: 7.4672

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58678771	PU_unref	Unigene	View CDS
gnl\|UG\|Lsa#S58679022	PU_unref	Unigene	View CDS
PUT-187a-Lactuca_sativa-43010	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.4	9.6e-11	214	251	4	41
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeae 41 +k rr+++NReAAr+sR+RKka++++Le+ L++ Lsa001275 214 SKTLRRLAQNREAARKSRLRKKAYVQQLETSRIRLTQL 251 6889*************************866666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.3E-9	209	287	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.5E-8	211	257	No hit	No description
PROSITE profile	PS50217	9.128	213	257	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.1E-7	215	255	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.37E-6	215	257	No hit	No description
PROSITE pattern	PS00036	0	218	233	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	6.6E-33	295	369	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence Send to blast
MASHRVGETG LSDSGPSHHH HHHQHLPYSV FPAFNPPNTS FINQEGSSFD FGELEEAIVL 60 QGYNKIHGDE TKLPLYTTVP RPAATLDMFP SWPMRVHQTP RGSNSSTDSG SAVNVAIASK 120 PESHSHLEPE SPISSNSKKT SSNPQQDQHQ QQQQQAIFRQ QLQNLQIPTQ NLEMESEGGS 180 PVTTGGSSHS QQTPKPFSEK KKGIGSTSER TLDSKTLRRL AQNREAARKS RLRKKAYVQQ 240 LETSRIRLTQ LEQDLQRARS QGLFVGGGGA GGNLSSGAAM FDMEYTRWLD EDQRHMAELR 300 KRVQSHLSDG DLRVVVDSFV AHYDEIFRLK SVAAKSDVFH LINGMWTTPA ERCFLWMGGF 360 RPSELIKMLA IQLDPLTEQQ VVGIYSLQQS SQQAEEALTQ GLDQLHQSLI DTIASGSVND 420 GVHHMAVALG KLTNLEGFVR QADNLRQQTL HQLHRILTVR QAAKCFLVIS EYYARLRALS 480 SLWASRPREA LMSDENSCQT TTDLQMVQSS QIHFSNYG

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence Send to blast

MASHRVGETG LSDSGPSHHH HHHQHLPYSV FPAFNPPNTS FINQEGSSFD FGELEEAIVL  60
QGYNKIHGDE TKLPLYTTVP RPAATLDMFP SWPMRVHQTP RGSNSSTDSG SAVNVAIASK  120
PESHSHLEPE SPISSNSKKT SSNPQQDQHQ QQQQQAIFRQ QLQNLQIPTQ NLEMESEGGS  180
PVTTGGSSHS QQTPKPFSEK KKGIGSTSER TLDSKTLRRL AQNREAARKS RLRKKAYVQQ  240
LETSRIRLTQ LEQDLQRARS QGLFVGGGGA GGNLSSGAAM FDMEYTRWLD EDQRHMAELR  300
KRVQSHLSDG DLRVVVDSFV AHYDEIFRLK SVAAKSDVFH LINGMWTTPA ERCFLWMGGF  360
RPSELIKMLA IQLDPLTEQQ VVGIYSLQQS SQQAEEALTQ GLDQLHQSLI DTIASGSVND  420
GVHHMAVALG KLTNLEGFVR QADNLRQQTL HQLHRILTVR QAAKCFLVIS EYYARLRALS  480
SLWASRPREA LMSDENSCQT TTDLQMVQSS QIHFSNYG

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023756852.1	0.0	transcription factor TGA9 isoform X1
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A2J6LTD4	0.0	A0A2J6LTD4_LACSA; Uncharacterized protein
STRING	EOY33449	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-161	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]