PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Lsa001002 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | MYB | ||||||||||||
Protein Properties | Length: 227aa MW: 25657.5 Da PI: 5.6078 | ||||||||||||
Description | MYB family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.5 | 2.1e-10 | 21 | 66 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 WT Ed+l+ da +++ + +W +Ia ++ g+t++q++ ++ Lsa001002 21 TWTRYEDKLFEDALVMFPDDvigRWQKIADAVP-GKTAEQVRAHYEV 66 7*****************99*************.**********965 PP | |||||||
2 | Myb_DNA-binding | 44.1 | 4.8e-14 | 125 | 169 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + +++G+g+W++I+r + Rt+ q+ s+ qky Lsa001002 125 PWTEEEHRLFLIGLQRYGKGDWRSISRNVVVSRTPTQVASHAQKY 169 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.686 | 17 | 71 | IPR017884 | SANT domain |
SMART | SM00717 | 2.5E-8 | 18 | 70 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.21E-12 | 20 | 76 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.3E-9 | 21 | 65 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.2E-6 | 21 | 65 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.48E-7 | 21 | 68 | No hit | No description |
PROSITE profile | PS51294 | 19.728 | 118 | 174 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.02E-17 | 120 | 175 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.1E-18 | 121 | 173 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 7.6E-12 | 122 | 168 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.3E-11 | 122 | 172 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.4E-12 | 125 | 169 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.70E-9 | 125 | 170 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MYHQDTDWAI DAAAAVAAES TWTRYEDKLF EDALVMFPDD VIGRWQKIAD AVPGKTAEQV 60 RAHYEVLVHD LLQIDSGQVE LPSYADDDGD ESFLSWDPEL RASQISFGMT KGSKHGDGER 120 KKGTPWTEEE HRLFLIGLQR YGKGDWRSIS RNVVVSRTPT QVASHAQKYF LRQNSMKKER 180 KRSSIHDITT TTDTIAVPPP PPPSTNFQGG ATPQLGYERQ QNFGYPM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-14 | 22 | 90 | 11 | 79 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023762897.1 | 1e-170 | transcription factor SRM1-like | ||||
Swissprot | Q9FNN6 | 2e-58 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A2J6MJS3 | 1e-169 | A0A2J6MJS3_LACSA; Uncharacterized protein | ||||
STRING | XP_009796939.1 | 9e-90 | (Nicotiana sylvestris) | ||||
STRING | XP_009618932.1 | 1e-89 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 4e-73 | MYB family protein |
Publications ? help Back to Top | |||
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