PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa000647

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

TALE

Protein Properties

Length: 782aa MW: 85686.8 Da PI: 6.5307

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58695500	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-46106	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.4	2.8e-09	519	556	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + Lsa000647 519 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 556 664459******************************88 PP
2	BELL	125	2.9e-40	380	451	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 er e+q++k+kLls+l+eVd+rY++y+eq+q+v++sF++v+g g+a pYt+lA+ka+SrhFrcLkdai+ q+ Lsa000647 380 ERIEHQRRKSKLLSMLDEVDRRYNHYCEQMQMVVNSFDMVMGFGAAVPYTALAQKAMSRHFRCLKDAISAQL 451 789******************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	9.4E-75	306	449	IPR006563	POX domain
Pfam	PF07526	6.3E-54	312	448	IPR006563	POX domain
PROSITE profile	PS50071	12.422	497	560	IPR001356	Homeobox domain
SMART	SM00389	1.2E-9	500	564	IPR001356	Homeobox domain
CDD	cd00086	2.85E-12	500	561	No hit	No description
SuperFamily	SSF46689	3.64E-17	502	567	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.5E-29	503	566	IPR009057	Homeodomain-like
Pfam	PF05920	4.0E-18	517	556	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 782 aa Download sequence Send to blast
MEVARFQEQL QHNKNKISLN SMSQDYIFNF SHGFERPSQD QQHQNHINQQ IRRDKLRVQX 60 FEPPPGSLVG LEDEGAGGAG GLPAVYESGA GMLSEMFNFP SGGPATELLE NQINYHQHQR 120 NQRPSATTGD WYGHSAQAMQ LFLMNPSHDS PSSQSSSHHH HHHNPSTSSS TLHMLLPNTV 180 PSSSSTLHHQ QSFGSSSGSG HGQFGQSTQF AWVPPGSTTH EGGGGGVDTH GLSLSLSSTL 240 QHLEAAKVEE LRISDDPAAA MFYFNQAGGG GGSDPYRNLQ LQGGGGGGVM GQTHHPIHVG 300 YGSSSLGVVK ALRTSRYVKA AQELLEEFCS VGRGQFKINK SSKHNTTNNS NQNPSNSSAA 360 GGGGASSASS KDLHPLSSAE RIEHQRRKSK LLSMLDEVDR RYNHYCEQMQ MVVNSFDMVM 420 GFGAAVPYTA LAQKAMSRHF RCLKDAISAQ LKNSCELLGE KDVGSSGVTK GETPRLKMLE 480 QSLRQQRAFH QMGMMEPEAW RPQRGLPERS VNILRAWLFE HFLHPYPSDA DKHLLARQTG 540 LSRNQVSNWF INARVRLWKP MVEEMYQQES KEEAENPNQS PQNQDEDQVE DDEEDEEQQQ 600 EDDEENTKYH NHRKYQNQTS NSHPSPLSAS ASATTQTTMP PPPPQTGAPT TYTTTTTTTT 660 TTAKRSEIND SENDPSLLAI NTQHRFSENQ AAAAAMSYSY PPISNPTGGI TTMAPPPVSH 720 PFDADTCRRG SMLGADYRTT TGDDAADIGS TLIRFGTTSG DVSLTLGLRH AGNLPEKTSF 780 FS

Sequence ? help Back to Top

Protein Sequence Length: 782 aa Download sequence Send to blast

MEVARFQEQL QHNKNKISLN SMSQDYIFNF SHGFERPSQD QQHQNHINQQ IRRDKLRVQX  60
FEPPPGSLVG LEDEGAGGAG GLPAVYESGA GMLSEMFNFP SGGPATELLE NQINYHQHQR  120
NQRPSATTGD WYGHSAQAMQ LFLMNPSHDS PSSQSSSHHH HHHNPSTSSS TLHMLLPNTV  180
PSSSSTLHHQ QSFGSSSGSG HGQFGQSTQF AWVPPGSTTH EGGGGGVDTH GLSLSLSSTL  240
QHLEAAKVEE LRISDDPAAA MFYFNQAGGG GGSDPYRNLQ LQGGGGGGVM GQTHHPIHVG  300
YGSSSLGVVK ALRTSRYVKA AQELLEEFCS VGRGQFKINK SSKHNTTNNS NQNPSNSSAA  360
GGGGASSASS KDLHPLSSAE RIEHQRRKSK LLSMLDEVDR RYNHYCEQMQ MVVNSFDMVM  420
GFGAAVPYTA LAQKAMSRHF RCLKDAISAQ LKNSCELLGE KDVGSSGVTK GETPRLKMLE  480
QSLRQQRAFH QMGMMEPEAW RPQRGLPERS VNILRAWLFE HFLHPYPSDA DKHLLARQTG  540
LSRNQVSNWF INARVRLWKP MVEEMYQQES KEEAENPNQS PQNQDEDQVE DDEEDEEQQQ  600
EDDEENTKYH NHRKYQNQTS NSHPSPLSAS ASATTQTTMP PPPPQTGAPT TYTTTTTTTT  660
TTAKRSEIND SENDPSLLAI NTQHRFSENQ AAAAAMSYSY PPISNPTGGI TTMAPPPVSH  720
PFDADTCRRG SMLGADYRTT TGDDAADIGS TLIRFGTTSG DVSLTLGLRH AGNLPEKTSF  780
FS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	2e-16	506	564	5	63	Homeobox protein Meis2
3k2a_B	2e-16	506	564	5	63	Homeobox protein Meis2
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023747438.1	0.0	LOW QUALITY PROTEIN: BEL1-like homeodomain protein 2
Swissprot	Q9SW80	1e-147	BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBL	A0A2J6JKY3	0.0	A0A2J6JKY3_LACSA; Uncharacterized protein
STRING	POPTR_0007s12170.2	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36870.2	1e-131	BEL1-like homeodomain 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]