PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa000578

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

Trihelix

Protein Properties

Length: 372aa MW: 42112.7 Da PI: 10.0897

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58688220	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-9103	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	54	4.3e-17	17	108	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfdqlea 87 +Wt++e l+Liea+re++ +l r+ l+ p+W++v++k+ + +++ qC++k+e+l++r++++k++++ + ++ s++ yf+ +ea Lsa000578 17 CWTRDEALVLIEAYRERWYALHRAFLRTPDWDAVAEKVttscPDVTPPKTSAQCRHKMEKLRQRHRAEKQRASAFSgERFFSSWFYFEAMEA 108 8***********************************8877778889999*****************99854778899****985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.3E-15	16	109	No hit	No description
PROSITE profile	PS50090	6.667	18	78	IPR017877	Myb-like domain
CDD	cd00167	0.00429	18	77	No hit	No description
SMART	SM00595	2.7E-8	25	114	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MSATAGEKPV RKFPPPCWTR DEALVLIEAY RERWYALHRA FLRTPDWDAV AEKVTTSCPD 60 VTPPKTSAQC RHKMEKLRQR HRAEKQRASA FSGERFFSSW FYFEAMEAME NGYDTEPGNL 120 QIDSEIHNPK SLNPGRGLRF KPSAVQNLVT LATSSTKHNM KSSPNFGPKV SNRYSLYPNN 180 GSNQEDEDED GGLVETPIEE TIYKGHKFLV ETPIREAKNH KNSAIGGGTR NKPPITPQPE 240 SGRSGLRPRK FSKVVVHDDE DANNGGMWVK VPRNTNMFRG RSQNANGKES NKGKKNKGGL 300 SEVVSSIKLL GDGFLKMEKM KIDMAREMEK MRMESEMKRN ELILESQKQI VDAFVKGVIE 360 SRKQQPTTMA HL

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MSATAGEKPV RKFPPPCWTR DEALVLIEAY RERWYALHRA FLRTPDWDAV AEKVTTSCPD  60
VTPPKTSAQC RHKMEKLRQR HRAEKQRASA FSGERFFSSW FYFEAMEAME NGYDTEPGNL  120
QIDSEIHNPK SLNPGRGLRF KPSAVQNLVT LATSSTKHNM KSSPNFGPKV SNRYSLYPNN  180
GSNQEDEDED GGLVETPIEE TIYKGHKFLV ETPIREAKNH KNSAIGGGTR NKPPITPQPE  240
SGRSGLRPRK FSKVVVHDDE DANNGGMWVK VPRNTNMFRG RSQNANGKES NKGKKNKGGL  300
SEVVSSIKLL GDGFLKMEKM KIDMAREMEK MRMESEMKRN ELILESQKQI VDAFVKGVIE  360
SRKQQPTTMA HL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023762954.1	0.0	uncharacterized protein LOC111911405
TrEMBL	A0A2J6LFN8	0.0	A0A2J6LFN8_LACSA; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	8e-38	Trihelix family protein