PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Lsa000537 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | LBD | ||||||||||||
Protein Properties | Length: 150aa MW: 16469.6 Da PI: 8.3713 | ||||||||||||
Description | LBD family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 137.2 | 5.8e-43 | 10 | 108 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC ++Cv++pyfp e+p kfanvhk+FGasnv+kll+++ +++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l++el+++++ Lsa000537 10 PCAACKFLRRKCIQGCVFSPYFPPEDPTKFANVHKIFGASNVSKLLNEIAPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQKELDATNA 108 7*********************************************************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.965 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.5E-42 | 10 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MASSTHPCAP CAACKFLRRK CIQGCVFSPY FPPEDPTKFA NVHKIFGASN VSKLLNEIAP 60 HQREDAVNSL AYEAEARLKD PVYGCVGAIS VLQRQVLRLQ KELDATNADL IRFSSHQNIL 120 TPSSQSSGSS VQNAHVLPPN YGSYSWNYNA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-63 | 9 | 114 | 10 | 115 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-63 | 9 | 114 | 10 | 115 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023765888.1 | 1e-109 | LOB domain-containing protein 25-like | ||||
Swissprot | Q8L8Q3 | 1e-65 | LBD25_ARATH; LOB domain-containing protein 25 | ||||
TrEMBL | A0A2J6L9D6 | 1e-108 | A0A2J6L9D6_LACSA; Uncharacterized protein | ||||
STRING | XP_004142848.1 | 2e-69 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 1e-67 | LOB domain-containing protein 25 |
Publications ? help Back to Top | |||
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