PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa000342

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

HB-other

Protein Properties

Length: 390aa MW: 44553.8 Da PI: 4.5776

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-56005	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	23.5	9.2e-08	309	354	7	52
--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 ++k le+Le+++++++ p+ +++ + + ++++ ++V WF +R Lsa000342 309 LKKVHLETLERVYRRSKRPTNAMISNIVHVTNIPRKKVLKWFEDKR 354 667789************************************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	8.681	300	354	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.28E-7	302	364	IPR009057	Homeodomain-like
CDD	cd00086	6.62E-5	303	354	No hit	No description
SMART	SM00389	0.0049	306	364	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	9.1E-6	308	355	IPR009057	Homeodomain-like
Pfam	PF00046	2.7E-5	309	354	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MASASPLHFW MTNQLPSTSY IPNPNPNHRL LHIPAISVNL RQLSSRCSVV TCARRRSSKS 60 NSAVPSSKKK KQGLGRSSVG KEEDIEEDAF EALFKQLEED LKNDGLSFDD DDDDEISEED 120 LIKLERELEE ALADDELVAL FDDTINEVNK VKVKDKKVKN TIDIMVNEAT EETETQDEED 180 DEYEDEDEDE DEDENEDEGP LELKRWQMRR LAYALKNGRR KTNIKNLAAD LCLDRAIVLE 240 LLRDPPPDLL ILSASLPDKP DPTILEPIIN PEDALLLKSE KNAINLNGKS TKKVPVHEMQ 300 SNWSAQKRLK KVHLETLERV YRRSKRPTNA MISNIVHVTN IPRKKVLKWF EDKRGEDGVP 360 NQRLPYQRET EAENEHQISS GDATEGEKVI

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MASASPLHFW MTNQLPSTSY IPNPNPNHRL LHIPAISVNL RQLSSRCSVV TCARRRSSKS  60
NSAVPSSKKK KQGLGRSSVG KEEDIEEDAF EALFKQLEED LKNDGLSFDD DDDDEISEED  120
LIKLERELEE ALADDELVAL FDDTINEVNK VKVKDKKVKN TIDIMVNEAT EETETQDEED  180
DEYEDEDEDE DEDENEDEGP LELKRWQMRR LAYALKNGRR KTNIKNLAAD LCLDRAIVLE  240
LLRDPPPDLL ILSASLPDKP DPTILEPIIN PEDALLLKSE KNAINLNGKS TKKVPVHEMQ  300
SNWSAQKRLK KVHLETLERV YRRSKRPTNA MISNIVHVTN IPRKKVLKWF EDKRGEDGVP  360
NQRLPYQRET EAENEHQISS GDATEGEKVI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	53	70	RRRSSKSNSAVPSSKKKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023759626.1	0.0	protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3-like
TrEMBL	A0A2J6LMW4	0.0	A0A2J6LMW4_LACSA; Uncharacterized protein
STRING	Solyc08g061140.2.1	1e-102	(Solanum lycopersicum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11270.1	5e-56	overexpressor of cationic peroxidase 3