PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa000282
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family AP2
Protein Properties Length: 522aa    MW: 57765.5 Da    PI: 6.7646
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58692209PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.61.8e-14233292155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  Lsa000282 233 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEDKAARAYDLAALKYWG 292
                57*******************666664478446**********99*************98 PP
2AP250.26.4e-16335386155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Lsa000282 335 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 386
                57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.69E-17233301IPR016177DNA-binding domain
CDDcd000183.15E-22233302No hitNo description
PfamPF008472.1E-11233292IPR001471AP2/ERF domain
PROSITE profilePS5103219.137234300IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-15234301IPR001471AP2/ERF domain
SMARTSM003802.9E-27234306IPR001471AP2/ERF domain
PRINTSPR003672.7E-6235246IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18335395IPR016177DNA-binding domain
CDDcd000181.47E-11335394No hitNo description
PfamPF008472.5E-10335386IPR001471AP2/ERF domain
PROSITE profilePS5103219.203336394IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-18336394IPR001471AP2/ERF domain
SMARTSM003807.2E-31336400IPR001471AP2/ERF domain
PRINTSPR003672.7E-6376396IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MARENNWLSF SLSPMEMFSS STSQPQQYFF NDNFYADGWS NNGKENNSHG EVKDGGDSPL  60
FRSFMESHIH QQQAPKLEDF LGGEININTT TASAASHPLN SFRYSDVSQT ETQDSSSLTN  120
IYDSNSSVYF SDQQDLKAIT TTAGFPSTFS TNSGSEVDDS ATQMTEFAGQ SIESGNELAY  180
AQCPMNALSL AITSTGAATR QTPPDQQKAI VAVDSISQNS CKKITDTFGQ RTSIYRGVTR  240
HRWTGRYEAH LWDNSCRREG QARKGRQVYL GGYDKEDKAA RAYDLAALKY WGPTATTNFP  300
VASYATEVEE MKSSTKQEFI ASLRRKSSGF SRGASIYRGV TRHHQQGRWQ ARIGRVAGNK  360
DLYLGTFATE EEAAEAYDIA AIKFRGMNAV TNFEMKRYDV EAISNSSLPI GGSAKRLKIS  420
LEAEQKPSLI ANHHQQPQYS SGGSISFANI PPVSALPYGM QFDPNSNQSY HHHQNHNFFQ  480
HLHLNNGGVT PQTSGSMSSV GNPMALLPPT PAEFFIWPHQ SY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023767004.10.0AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU21e-163AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A2J6L6X30.0A0A2J6L6X3_LACSA; Uncharacterized protein
STRINGVIT_00s1291g00010.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.21e-166AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]