PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa000238
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MIKC_MADS
Protein Properties Length: 260aa    MW: 29480.2 Da    PI: 7.1176
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58683030PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.51e-29959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               k+ien s rqvtfskRr+g+lKKA+ELSvLCdaeva+i+fs+tg+lye+ss
  Lsa000238  9 KKIENVSTRQVTFSKRRAGLLKKAHELSVLCDAEVAIIVFSNTGRLYEFSS 59
               68***********************************************96 PP
2K-box62.91.2e-21811691199
      K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                + ++ + q el+ L++e+  L++e+ +l+G++L+  ++++L qLe+qL +++ ++R+kKn l++e++e+l+++e+el  en+ Lr +++
  Lsa000238  81 QIEMRQEQVELEVLRNELTRLRNENARLMGNNLGGTNVQDLIQLEHQLSNAIISVREKKNALVFEEMEHLKHRERELGYENEVLRGEID 169
                456778999***************************************************************************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.081161IPR002100Transcription factor, MADS-box
SMARTSM004322.7E-41160IPR002100Transcription factor, MADS-box
CDDcd002651.07E-43278No hitNo description
SuperFamilySSF554553.53E-34288IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-30323IPR002100Transcription factor, MADS-box
PfamPF003195.5E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-303859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.3884174IPR002487Transcription factor, K-box
PfamPF014868.8E-1785168IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MGRGKIEIKK IENVSTRQVT FSKRRAGLLK KAHELSVLCD AEVAIIVFSN TGRLYEFSSS  60
SMRGILDRYN RATEPSTSQL QIEMRQEQVE LEVLRNELTR LRNENARLMG NNLGGTNVQD  120
LIQLEHQLSN AIISVREKKN ALVFEEMEHL KHRERELGYE NEVLRGEIDK LRRFIPLALP  180
STQPTFLEQT PVAAPSSSAG ISKHDRVSPD TVCYYGSDNT DSETALQLRP PCSDHSKTKE  240
STLTKRESNS SSCRSDEMEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-22179179MEF2C
5f28_B3e-22179179MEF2C
5f28_C3e-22179179MEF2C
5f28_D3e-22179179MEF2C
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023768196.10.0MADS-box transcription factor 23-like
TrEMBLA0A2J6MEU90.0A0A2J6MEU9_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.16e-55AGAMOUS-like 15