PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa000226
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family GATA
Protein Properties Length: 325aa    MW: 35505.8 Da    PI: 5.2203
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58688328PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-39447PU_unrefplantGDBView CDS
PUT-187a-Lactuca_sativa-41161PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.31.9e-17225258134
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  Lsa000226 225 CLHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 258
                99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.4E-764310IPR016679Transcription factor, GATA, plant
SMARTSM004012.7E-16219269IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.4E-14223256IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577164.61E-15223282No hitNo description
PROSITE profilePS5011411.187223255IPR000679Zinc finger, GATA-type
CDDcd002023.49E-14224271No hitNo description
PfamPF003204.0E-15225258IPR000679Zinc finger, GATA-type
PROSITE patternPS003440225250IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MSGENFMDEM EEIDCGSFFD HIDDLIEFPP VNDTSLNSLD CNEFPNIWTN NSDDLQVSDP  60
IFCGSNSDSA SVLSAELAVP YEDIVQLEWL SNFVEDSFSG GGLTIPVAAH HQFQTTSPVS  120
VLESSSSSSS SSSTSGGGNM IPFSPIQRGP QRARTKRPRP TTFNPRAMIE LLSPLLLLAP  180
VSSESENNFV SDQKKKKKVK RSKIQAGPPT ENQNQIQSGQ GVRKCLHCEI TKTPQWRAGP  240
MGPKTLCNAC GVRYKSGRLF PEYRPAASPT FVPTLHSNSH KKVVEMRVKG GPNDVRESEE  300
PTPVSSVSVP VAEPKLIGYM MPQAD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155159KRPRP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023764712.10.0GATA transcription factor 8-like
RefseqXP_023764713.10.0GATA transcription factor 8-like
TrEMBLA0A2J6LBU20.0A0A2J6LBU2_LACSA; GATA transcription factor
STRINGVIT_13s0019g04390.t011e-110(Vitis vinifera)