PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Lsa000164 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | GRF | ||||||||||||
Protein Properties | Length: 411aa MW: 44136.4 Da PI: 7.8662 | ||||||||||||
Description | GRF family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 74.9 | 8.8e-24 | 185 | 229 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRC ++++ ++k+CErH++rgr+rsrk++e Lsa000164 185 DPEPGRCRRTDGKKWRCAKDAVVDQKYCERHMNRGRHRSRKPVEG 229 79****************************************986 PP | |||||||
2 | QLQ | 58.5 | 2.1e-20 | 114 | 150 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy+ an+ +P++Ll +i+k Lsa000164 114 GPFTPSQWMELEHQALIYKYITANAAIPSNLLIPIRK 150 59*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 4.3E-11 | 114 | 150 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 9.0E-15 | 115 | 149 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.81 | 115 | 150 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.811 | 185 | 229 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.9E-20 | 186 | 228 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 411 aa Download sequence Send to blast |
MDFGVLDGLV SSDNHNKNTL ISCGDLDLKP KWFGSGGGFG KQESPISALA TGTREDEWRD 60 LKMAKIGEDD ISRRSNGAQN MLSFSSPNTQ TVTFPYYARH NTVSGYGAGA GAGGPFTPSQ 120 WMELEHQALI YKYITANAAI PSNLLIPIRK ALESAAFSAY SGAHLRQNSS VGWGALHLGF 180 CNSSDPEPGR CRRTDGKKWR CAKDAVVDQK YCERHMNRGR HRSRKPVEGQ TCKLTTSTAV 240 LRHTSSQPVT PNPAATSSED NMSVVNKASF EATVVPMSSP TSVDLKKNQF SIGGTEFGFV 300 CSDSLLNPMH KSDLKSQNPL HQFMEDSNQG QLSISVSTNS DGFVSSTTSP TSHSLLRMGL 360 GMGKMTTNAQ HDVSWETSMG GPLGEVLNTS PVGPKLDDGG LGTTIGLGHL L |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023757106.1 | 0.0 | growth-regulating factor 1-like isoform X1 | ||||
TrEMBL | A0A2J6LSW7 | 0.0 | A0A2J6LSW7_LACSA; Uncharacterized protein | ||||
STRING | EOY15657 | 1e-100 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 2e-51 | growth-regulating factor 2 |