PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa000147
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 616aa    MW: 70244.9 Da    PI: 5.2751
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-40376PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.62e-12347390654
                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 ++Er+RR+++N+++ +Lr+l+Pk      +Kl+ a+iL+ A+eY+ +L
  Lsa000147 347 LMAERKRRKKLNDRLYTLRSLVPKI-----TKLDRASILKDAIEYVMEL 390
                589*********************7.....7**************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.3E-219156IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000837.14E-14339394No hitNo description
PROSITE profilePS5088816.132341390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-17344404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-10347390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-16347396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-16348404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MEVLQEVMER LRSIVGPESW DYCVLWKPSK DQRLIEWADC CCSGSNGSHG NGGEDEQRVL  60
FQCKDVTFNH STKDACHLLS LLPSSMPYDH SGIYGQTMIS NQPRWLNFSN SSNTDFSEDN  120
LGTKALIPVP IGLVELFVSK QIPEDQSIID FVTTLFNMSL EQHPILNTNN NVDSSFSVNI  180
DNLDNEESKD YIAQVLDDQK DPNNHFQPPI SPATMLENLN LSPHNISDNH LHPMNFLQQF  240
NYSEKPNGKN MFLEGTSEPM MMNHDDPFDP NSEENVGFDH EIDMALQGQM MGENMNKGHL  300
MEPLENGAKK QGDMNRSDSV SDCSDQNDEE DDPKCRRRNG KPQSKNLMAE RKRRKKLNDR  360
LYTLRSLVPK ITKLDRASIL KDAIEYVMEL KRQVEELQNE LEENSDDEGT TNNQSTIVEQ  420
EVMHGNGSNL KRRFSHGHGM FVNGPQLEAY SGVGAIDVPK HTPDTEGANE KGQQMEPQVE  480
VASLDGNEFY VKVFCEHKPG EFVRLMEAFN SLGLEVTNVN VTSFRCLVLN VFKVERKDSE  540
MVQADHVRES LLEITRNPSR GWPETTTKAP ENGHGMADHQ LHHHHHNHNH HHNHHSHPHN  600
HQKPQYHYNA IYQVLN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1335355RRRNGKPQSKNLMAERKRRKK
2349356ERKRRKKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023751248.10.0transcription factor ABORTED MICROSPORES
TrEMBLA0A2J6M5M80.0A0A2J6M5M8_LACSA; Uncharacterized protein
STRINGEOX976291e-177(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-118bHLH family protein