PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa000062
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family C3H
Protein Properties Length: 516aa    MW: 56085.4 Da    PI: 7.7342
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S32104193PU_unrefUnigeneView CDS
PUT-187a-Lactuca_sativa-13507PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.66.5e-11165190227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                +++ C +++ t tCk+Gd+CkF H++
  Lsa000062 165 GEKDCAHYMLTRTCKFGDSCKFDHPM 190
                7889********************95 PP
2zf-CCCH34.34e-11217240427
                ---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                + C++f++t  Ck+G+rCkF+H++
  Lsa000062 217 PDCPYFLKTQKCKFGPRCKFNHPK 240
                78********************96 PP
3zf-CCCH38.42.1e-12263287327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                +++C f+++tG Ck+G++CkF+H++
  Lsa000062 263 EPPCVFYMKTGKCKFGSTCKFHHPK 287
                79*********************96 PP
4zf-CCCH38.22.5e-12338364127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                ++++ C+f+++tG CkyG++C+++H++
  Lsa000062 338 PGEADCPFYLKTGSCKYGATCRYNHPE 364
                57899********************96 PP
5zf-CCCH32.81.2e-10421442526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                +C+++++tG+C +G+rCk++H+
  Lsa000062 421 ECDYYMKTGICMFGERCKYHHP 442
                7********************8 PP
6zf-CCCH34.14.7e-11475495626
                -SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                C+++++tG CkyG +C+F H+
  Lsa000062 475 CPYYMKTGACKYGVTCRFDHP 495
                ********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.0E-4163190IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.291163191IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-8165190IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-5165190IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-4169188IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-5213240IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.056213241IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.18E-5216242IPR000571Zinc finger, CCCH-type
PfamPF006428.0E-9217240IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4219239IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-6260287IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.248260288IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-9263287IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6264288IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-5265286IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-7337364IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.554337365IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-10339364IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5341364IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4343364IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.38416444IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-6416443IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.11E-6417445IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-8421442IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-4422442IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4469496IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.361469497IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5473496IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-8475495IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4475494IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MANQLYGSSS YGYGGGSNSS SIYTSKSIAE QYVPSDPSYL SSSRFFGSDP LSSSSNLFSY  60
SSISDRGPSM LYNHKDTIGT GYSAAARMTA REALWPGPPG VDAGVSSTSI ESILAGYKRS  120
STEALYHQSL LGAHNTLGFS SNPLVKRPRF EATTSLLPVY PQRPGEKDCA HYMLTRTCKF  180
GDSCKFDHPM WVPEGGIPDW KEVPTTSEAL PERPEAPDCP YFLKTQKCKF GPRCKFNHPK  240
DKAAPLAALE NIDTSELPER PSEPPCVFYM KTGKCKFGST CKFHHPKDII ITATEVEDGN  300
GETFIVGGGT NGNGNLELSI TPFAPAMLHN SKGLPIRPGE ADCPFYLKTG SCKYGATCRY  360
NHPERYAINP AGAIVSTPAA HLTFGMVNPI SAVMQTVDPR LAQTTLGLGP TVYPQRPGQM  420
ECDYYMKTGI CMFGERCKYH HPIDRSAHAQ SAKESQLSIK LTLAGLPRRE GAIHCPYYMK  480
TGACKYGVTC RFDHPTPGEV MAAPTSQGPS DDVKEE
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023737029.10.0zinc finger CCCH domain-containing protein 37 isoform X1
SwissprotQ941Q31e-176C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A2J6K8E50.0A0A2J6K8E5_LACSA; Uncharacterized protein
STRINGXP_010260864.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-174floral homeotic protein (HUA1)