PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR12G16500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NAC | ||||||||
Protein Properties | Length: 372aa MW: 41595.3 Da PI: 7.8833 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 152.5 | 1.9e-47 | 37 | 183 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk............kvkaeekewyfFskrdkkyatgkrknratksgyW 83 pGfrFhPtd+elv +yL++kve+k++++ e+ike+diyk++PwdLpk +++++++ +yfF+ r +ky+++ r+nr+t sg+W LPERR12G16500.1 37 FPGFRFHPTDQELVGFYLTRKVEKKPFSI-EIIKEIDIYKHDPWDLPKashggvqmlqgsSATEKDECCYFFCLRGRKYRNSIRPNRVTGSGFW 129 69***************************.89***************6689999877664333345566************************* PP NAM 84 katgkdkevlskkgel.........vglkktLvfykgrapkgektdWvmheyrl 128 katg dk+++s++++ +glkk+Lv+y+g+a +g+ktdW+mhe+rl LPERR12G16500.1 130 KATGIDKPIYSNNNSSsaiagagncIGLKKSLVYYRGSAGRGTKTDWMMHEFRL 183 ***********83333556666666***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 47.792 | 36 | 220 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 8.11E-48 | 36 | 219 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.6E-23 | 38 | 183 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MEEKMLERIK ESGSPSPGGA AGILEDTGTD HDDDLVFPGF RFHPTDQELV GFYLTRKVEK 60 KPFSIEIIKE IDIYKHDPWD LPKASHGGVQ MLQGSSATEK DECCYFFCLR GRKYRNSIRP 120 NRVTGSGFWK ATGIDKPIYS NNNSSSAIAG AGNCIGLKKS LVYYRGSAGR GTKTDWMMHE 180 FRLPSSSSPS PADYDFSTAS LPNANLQDAE IWTICRIFKR RMTYTKGRAS INNTMINKRS 240 HQLQLQQIQQ QQQQQYYYHD HQYRRHYTSM ASDAETTMTT MSQSQSHTVV TDEFRHRQTS 300 SQFILDFQAG MTSSSSSTVT AGVVQPPAAA TATGWGGEQV NFRDGGGSSS GSSWDELGRI 360 MEMSTNSANC YM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 8e-42 | 38 | 226 | 17 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR12G16500.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012620 | 7e-63 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006664770.1 | 1e-131 | PREDICTED: protein FEZ-like | ||||
Swissprot | Q9SK55 | 7e-74 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A0D9Y1Q3 | 0.0 | A0A0D9Y1Q3_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR12G16500.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1191 | 38 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 4e-65 | NAC domain containing protein 42 |