PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G16030.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NF-YA
Protein Properties Length: 310aa    MW: 33921.3 Da    PI: 9.464
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G16030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA98.19.2e-31145201158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      d+p+YVNaKQy +Il+RR +Rak+e+e++l  k+rkpylheSRh hA+rR+RgsgGrF
  LPERR12G16030.1 145 DAPIYVNAKQYAGILRRRRARAKAERENRL-VKARKPYLHESRHLHAMRRARGSGGRF 201
                      68****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.5E-34143204IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.972144204IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.3E-28147201IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.7E-23147169IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860149169IPR018362CCAAT-binding factor, conserved site
PRINTSPR006164.7E-23178201IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MMSFKNHEGF GQVAAMASNG GASLPWLLYG EPLGQGRPAM SPEGVVPRAQ TPLDPPAPTM  60
DRGVPEVLNF SMVQGKGDKG SEHSTTIALQ SPFAEYNGRF ELGLGQSVVP SNYPYADQHY  120
GLLSPYGMRS MPSGRMLIPP NMPADAPIYV NAKQYAGILR RRRARAKAER ENRLVKARKP  180
YLHESRHLHA MRRARGSGGR FLNTKKETNG KTASGGRKVM DIIPSLRTAA SPSSEMQHSE  240
QCNPSSVSSL SGSEVTSIYE HEDVDHFHSF DHLRTHFFTP LPSIMDSEHG AGNPFKWTAA  300
SDGCCDLLRA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-17145209266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G16030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2880320.0AB288032.1 Oryza sativa Japonica Group OsHAP2F mRNA for HAP2 subunit of HAP complex, complete cds.
GenBankAK0737420.0AK073742.1 Oryza sativa Japonica Group cDNA clone:J033067G24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618449.10.0nuclear transcription factor Y subunit A-10
RefseqXP_015618450.10.0nuclear transcription factor Y subunit A-10
TrEMBLA0A0D9Y1I70.0A0A0D9Y1I7_9ORYZ; Uncharacterized protein
STRINGLPERR12G16030.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23073790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.31e-29nuclear factor Y, subunit A10