PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR12G15920.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

TCP

Protein Properties

Length: 302aa MW: 31257.8 Da PI: 8.4861

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR12G15920.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	106.3	4.7e-33	50	193	1	121
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........................ssssa 70 aag+kdrhsk+ T++g+RdRRvRls+++a+ f+d+qd+LG+d++sk+i+WL+++a ai+ l+++ +++ LPERR12G15920.1 50 AAGGKDRHSKVVTSRGLRDRRVRLSVPTAIAFYDIQDRLGVDQPSKAIDWLIRAAASAIDSLPSLdcssfllpsppiptpatatadadgDNDVT 143 6899********************************************************************9999877655444322211111 PP TCP 71 seceaesssssasnsssg.......kaaksaakskksqksaasalnlak.esrakarar 121 se++++ss + + +++ +++q+++a++ +a+ + a a a LPERR12G15920.1 144 SETSKSSS---------VlslaagnGNGNGNENVEQQQQQQATMAYYAAaAHMAAAPAM 193 22233333.........133433332223333333344444434444442444444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.0E-31	52	174	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	30.896	53	111	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MEEFAVAGNN NGSNNKKRPR GALAAVAGNN GASSPATAAA WRTSRVARAA AGGKDRHSKV 60 VTSRGLRDRR VRLSVPTAIA FYDIQDRLGV DQPSKAIDWL IRAAASAIDS LPSLDCSSFL 120 LPSPPIPTPA TATADADGDN DVTSETSKSS SVLSLAAGNG NGNGNENVEQ QQQQQATMAY 180 YAAAAHMAAA PAMAFEMAPA MPHHHLAFSQ ELNATVAFER GTLQSNAVAA ASLWPPPAAA 240 SQHQQYPFLL QRFAAAPSEV AGLPFFLAGG GGGGGGAAGA PVAANVGERR LQLWDFKEER 300 KS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	2e-21	58	112	1	55	Putative transcription factor PCF6
5zkt_B	2e-21	58	112	1	55	Putative transcription factor PCF6
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269\|PubMed:12000681}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR12G15920.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP014968	8e-90	AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBank	BX000457	8e-90	BX000457.2 Oryza sativa chromosome 12, . BAC OJ1388_B05 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002442549.1	6e-85	transcription factor PCF8
Refseq	XP_010237011.1	7e-85	transcription factor PCF8
Refseq	XP_021301595.1	6e-85	transcription factor PCF8
Refseq	XP_021301596.1	6e-85	transcription factor PCF8
Swissprot	A2ZMR9	9e-87	PCF8_ORYSI; Transcription factor PCF8
TrEMBL	A0A0D9Y1H2	0.0	A0A0D9Y1H2_9ORYZ; Uncharacterized protein
STRING	LPERR12G15920.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11553	26	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02150.1	5e-30	plastid transcription factor 1