PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G15710.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB
Protein Properties Length: 1129aa    MW: 124320 Da    PI: 6.4885
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G15710.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.6e-07536132
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                     +++WT+eE   l+ +++++G+g+W tI +   
  LPERR12G15710.1  5 KQKWTAEEKSALKAGIAKHGTGQWCTILKDPE 36
                     79*************************98765 PP
2Myb_DNA-binding322.8e-10111160246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 
                      ++WT+eE+  l+ +++++G g W+tI +          R+  ++k++w++
  LPERR12G15710.1 111 QKWTAEEESALKAGIAKHGAGKWRTILKDPDfsnvlRYRSNVDLKDKWRN 160
                      69**********************************99***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512948.335151IPR017930Myb domain
SuperFamilySSF466891.57E-8252IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-8452IPR009057Homeodomain-like
SMARTSM007170.41459IPR001005SANT/Myb domain
CDDcd116603.98E-11650No hitNo description
PROSITE profilePS512948.288107166IPR017930Myb domain
SMARTSM007177.1E-7109164IPR001005SANT/Myb domain
SuperFamilySSF466892.47E-13111164IPR009057Homeodomain-like
CDDcd116601.28E-19111162No hitNo description
PfamPF002491.5E-6111161IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-12112161IPR009057Homeodomain-like
SuperFamilySSF467851.14E-14235315IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005267.3E-11236301IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.4E-13238308IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150423.123238306IPR005818Linker histone H1/H5, domain H15
PfamPF005382.4E-7243299IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF546951.57E-15471575IPR011333SKP1/BTB/POZ domain
Gene3DG3DSA:3.30.710.103.3E-13479575No hitNo description
PfamPF006516.9E-7489575IPR000210BTB/POZ domain
PROSITE profilePS5009710.634490558IPR000210BTB/POZ domain
PfamPF030002.5E-86673931IPR027356NPH3 domain
PROSITE profilePS5164991.636673955IPR027356NPH3 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1129 aa     Download sequence    Send to blast
MGAPKQKWTA EEKSALKAGI AKHGTGQWCT ILKDPEFSNV LRYRSNIDLK LHSGVRDPEP  60
RTEFVTDEST EPSVEMDEDP TTGRTTGPTI RRTARKSAGQ RYKKARNEEL QKWTAEEESA  120
LKAGIAKHGA GKWRTILKDP DFSNVLRYRS NVDLKDKWRN MNVTVNASGA RDRVKTTTTT  180
TAATTPVVKK PRSAPKHEGG AGGHSTSTAI INATVTSDGD EDIVDAVPLA TSSSSKRSLS  240
RLDNIIVEAV RSLNEPTGSY KTAIANYIEE QYWPPADFDH VLSSKLNDLT ASGKLIKVNR  300
KYRIAPSSSL SEGRSSKVVL LEDIPKEPIK LDREDVVTLT KSQVDAELAR MRTMTADEAA  360
AAAARAVAEA ETIMAEAEAA VREAEAAEAE AVAAQAFAEA AVASMKNRSS AKLSLTRIKI  420
FERTVQPTLK KRSDNFLGTE VLGLEAFIAL SQLHQGNEVR MIGHDHRIND SFYQQTSCDP  480
HRYCTTGLPS DVHVEVGEIS FHLHKFPLLS KSAILGRLIE ENSDRDECII KLSNIPGGAK  540
SFELVARFCY GLKIELSSEN VVYLRCAAEH LEMTEETSGD NLINQTEAFF NQVVLRSWKD  600
SLQALRTCDG LLPHAEDLHI VKRCIESLAG KASIDPDLFG WPVSEHSTMQ SPGGSVLWNG  660
ISTGAKVRNC SSDWWYDDVS SLSFPTYKRL ISSMESRGIK QEIIAGSLTY YAKKFLPGLN  720
RRQSTGPMPL TAATLSDGEQ RHLLEEIDRM LPLQKSLIST NILLWLLRTA MILKVDRACI  780
SNLEKRVGIQ LDEATLEDLL LPNFSYTMDT LYNVECVHRI LDHFLAMDQT TSAGGASPCL  840
DDVMASPSLA PITAVAKLID GYLAEIAPDI NLKPLKFQSL AAALPEYARP LDDGLYRAID  900
VYLKSHPMLP ESDREQLCRL IDCQKLSLEA CTHAAQNERL PLRVVVQVLF FEQLQLRTSV  960
AGCLLVSDNI EASSRTLRGG NAGDVGGGWA TAAVRENQAL RVGMDGMRMR LMELERECSD  1020
MRQDIQKLGR GGGRRRHRRL AASGVAAGKD GGGGWTARVQ RLIKPKMMKL QMCSAQQDAV  1080
PAAVAVTGSG ERRQKEEEEE KIEEKLQVKV EEDEDDGDGD GDGCLIHHT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
110321039GRRRHRRL
Functional Description ? help Back to Top
Source Description
UniProtMay act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G15710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619997.10.0BTB/POZ domain-containing protein At1g30440
RefseqXP_015619998.10.0BTB/POZ domain-containing protein At1g30440
SwissprotQ9S9Q90.0Y1044_ARATH; BTB/POZ domain-containing protein At1g30440
TrEMBLA0A0D9Y1D90.0A0A0D9Y1D9_9ORYZ; Uncharacterized protein
STRINGLPERR12G15710.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.33e-51telomere repeat binding factor 1
Publications ? help Back to Top
  1. Gingerich DJ, et al.
    Cullins 3a and 3b assemble with members of the broad complex/tramtrack/bric-a-brac (BTB) protein family to form essential ubiquitin-protein ligases (E3s) in Arabidopsis.
    J. Biol. Chem., 2005. 280(19): p. 18810-21
    [PMID:15749712]
  2. Sullivan S,Thomson CE,Kaiserli E,Christie JM
    Interaction specificity of Arabidopsis 14-3-3 proteins with phototropin receptor kinases.
    FEBS Lett., 2009. 583(13): p. 2187-93
    [PMID:19524572]