PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR12G15680.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

NF-YA

Protein Properties

Length: 161aa MW: 17824 Da PI: 10.2116

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR12G15680.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	105.6	4.2e-33	57	113	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e+ekkl k+rkpylheSRh+hAl+R+Rg gGrF LPERR12G15680.1 57 EEPVYVNAKQYNAILRRRQSRAKAESEKKL-VKGRKPYLHESRHQHALKRARGAGGRF 113 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.7E-35	55	116	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.332	56	116	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.2E-27	58	113	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.2E-23	59	81	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	61	81	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.2E-23	90	113	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MELMNGKNSK VKGQFAYPNI DPYYGSIYAA YGGQPMMHPP LVGMHPTGLP LPTDAIEEPV 60 YVNAKQYNAI LRRRQSRAKA ESEKKLVKGR KPYLHESRHQ HALKRARGAG GRFLNSKSDD 120 KEEHSDSSSK DKQDGVASHD SGQPSTSPSS VNQNKKSKTC N

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-22	56	129	1	74	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR12G15680.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB288028	1e-170	AB288028.1 Oryza sativa Japonica Group OsHAP2B mRNA for HAP2 subunit of HAP complex, complete cds.
GenBank	AK065163	1e-170	AK065163.1 Oryza sativa Japonica Group cDNA clone:J013002C07, full insert sequence.
GenBank	HQ839673	1e-170	HQ839673.1 Oryza sativa Japonica Group NF-Y transcription factor 22 (NF-Y22) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015618404.1	6e-97	nuclear transcription factor Y subunit A-7 isoform X1
Swissprot	Q84JP1	2e-44	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A0D9Y1D4	1e-116	A0A0D9Y1D4_9ORYZ; Uncharacterized protein
STRING	LPERR12G15680.1	1e-116	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6555	38	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	9e-42	nuclear factor Y, subunit A7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]