PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR12G15510.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NAC | ||||||||
Protein Properties | Length: 331aa MW: 35970.8 Da PI: 9.1785 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.3 | 2.6e-52 | 13 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhP+d+el+++yL++kv+gk ++ + + +vd++kvePwdLp+ ++ + kewyfFs rd+kyatg+r+nrat sgyWkatgkd+ v LPERR12G15510.2 13 LPPGFRFHPRDDELICDYLAPKVAGKVgFSGRRPpMVDVDLNKVEPWDLPAVASVGGKEWYFFSLRDRKYATGQRTNRATISGYWKATGKDRVV 106 79************************986665656***************8888899***********************************99 PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +g+lvg++ktLvfy+grapkg+kt+Wvmheyr+ LPERR12G15510.2 107 AR-RGALVGMRKTLVFYQGRAPKGRKTEWVMHEYRM 141 99.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.8E-59 | 3 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.678 | 13 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.5E-27 | 14 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MSMSILSMVE AELPPGFRFH PRDDELICDY LAPKVAGKVG FSGRRPPMVD VDLNKVEPWD 60 LPAVASVGGK EWYFFSLRDR KYATGQRTNR ATISGYWKAT GKDRVVARRG ALVGMRKTLV 120 FYQGRAPKGR KTEWVMHEYR MEGVHDQQAS SFSSKEDWVL CRVICKRKTG GGATSKSRNL 180 SSTIVHESST PTSSPPLPPL TDTTLAQLHA SMNNTITSSS GAAAAVAALE QVPCFSSFSN 240 NIASNNNGSN SNSATVAQQC YLPIVTGNNG MSYLDHGLPE FGSFLDTQNC DKKMLKAVLS 300 QLNSIGGEVL PSLLPEMAAS AAVSSSWMNQ F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-50 | 1 | 167 | 1 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR12G15510.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK071464 | 0.0 | AK071464.1 Oryza sativa Japonica Group cDNA clone:J023097O13, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006664181.1 | 0.0 | PREDICTED: NAC domain-containing protein 21/22-like | ||||
Swissprot | Q84TE6 | 1e-89 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A0D9Y1B3 | 0.0 | A0A0D9Y1B3_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR12G15510.1 | 0.0 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 2e-80 | NAC domain containing protein 1 |