PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G14660.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family G2-like
Protein Properties Length: 341aa    MW: 37581.8 Da    PI: 8.2171
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G14660.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like71.51.2e-2275119246
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehv 46 
                      pr+rWt+ LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+h+
  LPERR12G14660.1  75 PRMRWTTALHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHM 119
                      9*****************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.9E-1973119IPR009057Homeodomain-like
SuperFamilySSF466891.68E-873118IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-1475118IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MNTTAPPQPS SSSEEAPHPD LSLQISPPSP SPAPATDDDH RRMRKPLHQP VQTAHGFKKN  60
SGGGGGGGKR SARAPRMRWT TALHAHFVHA VELLGGHERA TPKSVLELMN VKDLTLAHMY  120
RTVKGTDRSC VAGHGQAREM GFLMRRGLIA EVDVFDGFNN NMVNTTSNNT IARKSQSPGE  180
QRLQDIQNGW PHYLASSEPD HLLMEQRLMQ NIWKGAAPND QHHQETTTAV LHHEHRRRLD  240
EIIAGRWPPP ASTTNTSSSS GDTTPSSLDW LLHQKNQKHN NDDGDGYTTA RRDHHQAAAS  300
GVKDPSLEMS LGRQGWQITM ENCNSSVESS SSKELTLLKC L
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G14660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1002032e-63FP100203.1 Phyllostachys edulis cDNA clone: bphylf053h02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664158.21e-131PREDICTED: uncharacterized protein LOC102712487
TrEMBLA0A0D9Y1150.0A0A0D9Y115_9ORYZ; Uncharacterized protein
STRINGLPERR12G14660.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37423168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.25e-32G2-like family protein