PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G14470.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family G2-like
Protein Properties Length: 370aa    MW: 39464.8 Da    PI: 6.9536
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G14470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.74.8e-32226281156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      k+r++W+peLH+rFv a+++LGG++ AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  LPERR12G14470.1 226 KARRCWSPELHRRFVAALQRLGGPQTATPKQIRELMKVDGLTNDEVKSHLQKYRLH 281
                      68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.583223283IPR017930Myb domain
SuperFamilySSF466892.09E-17224284IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-29224284IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-26226281IPR006447Myb domain, plants
PfamPF002493.0E-7228279IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MMRSSSSAAE PGFFFGGGDM RTLAARTAMA RLAAGAGAGE KSARFEECIR SLEAEKAKME  60
VFRRELPISV HLIADVIEWL KDEVEQRRRT AAPAPAKVTK AKAEEEEEEE EENDKRSWMS  120
SAQLWSCGSH ATVSTSNYSN GKKLQQQKVS NPFMPLTTSP AFAKSPEKSG LAGAGATPLP  180
AVPDLSLSSP AAAIDAPAAP SATSSAVTDI AGAAAQRQQQ QAVQRKARRC WSPELHRRFV  240
AALQRLGGPQ TATPKQIREL MKVDGLTNDE VKSHLQKYRL HTRRASDGGG DHQTAGGGLW  300
PPPPEQYTTS QHSTSQSGSP QGPLQLTVSS SHAVSVTAGD SCDGEGEEED GKSESYSWEM  360
QNGAKASSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A9e-15226279154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B9e-15226279154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C9e-15226279154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D9e-15226279154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G14470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL8448801e-76AL844880.3 Oryza sativa chromosome 12, . BAC OSJNBb0049H14 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149681e-76AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618787.11e-152transcription factor HHO6
TrEMBLA0A0D9Y0Y90.0A0A0D9Y0Y9_9ORYZ; Uncharacterized protein
STRINGLPERR12G14470.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55823353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.17e-29G2-like family protein