PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR12G13750.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | GRAS | ||||||||
Protein Properties | Length: 651aa MW: 71200.2 Da PI: 4.9382 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 285.3 | 1.7e-87 | 341 | 641 | 1 | 302 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 l++lL++cA+av+++d + a++lL++++++a p+gd++qRla++f+e+L+arla+++s + ++l +++ts ++ l+a++l+ + + k+s LPERR12G13750.1 341 LRTLLIHCAQAVATDDRRSATELLKQIKQHAKPTGDATQRLAHCFAEGLQARLAGTGSLVHQSLMAKRTS---AVDILQAYQLYMAAICFKKVS 431 6789***************************************************999999999998888...9******************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186 ++ Nq+I++a g++++Hi+D++i++G+QWp++l+ +++R++gpp++RiTg++ p++g +e++ etg+rL+k+A+e++vpf++n ++a ++ LPERR12G13750.1 432 FMFSNQTIYNASLGKKKIHIVDYGIQYGFQWPCFLRRISQREGGPPEVRITGIDLPQPGfrPTERIDETGRRLSKYAQEFNVPFKYNSIAAAKM 525 **********************************************************9******************************999** PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280 e+++ e+L+++p+E+l Vn++ + ++l+desv ++s+rd vL+ +++++P+v++++ + + +++ F++rf eal yysalfd l+a+ prese LPERR12G13750.1 526 ESIRKEDLNIDPDEVLFVNCQCHFKNLMDESVVIDSPRDIVLSNIRKMQPHVFIHSIVNGSFSAPFFVTRFREALFYYSALFDVLDATTPRESE 619 ********************************************************************************************** PP GRAS 281 erikvErellgreivnvvaceg 302 +r +E+ ++gr++ nv+ac + LPERR12G13750.1 620 QRLLIEQNIFGRAALNVIACYE 641 ********************65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 54.935 | 315 | 651 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.8E-85 | 341 | 641 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 651 aa Download sequence Send to blast |
MGSSSTAADS FPIAGDDVTG GGIGIHDAAD DFFYLSDLAP ASPSSYLNLP PSPHPPGDHQ 60 GGGGGGGDSS SSAAAAAGPE DLVLPFISRM LMEEDIDDKF FYDYPDHPAL LQAQQPFLEI 120 LSDPSSTSIS DDLLRLSSPT SSDTSAAAVN SYPSAAPVEL DPAEFFANSD LMSTAFLKGM 180 EEANKFLPSE DKLTIIDLEA SSENYLKGVE EARRFLPSDD RLNLVGFNGV TVKKEEAVDV 240 VTVAAAAGRG RKNRYDDEEL EMEGGRSSKQ TAVQGDDVAA RAMFDQVMMP SHENCTEMME 300 KLRIAMREEA AKNEASNGGG KGGSNGKTRG ARRGGKDVVD LRTLLIHCAQ AVATDDRRSA 360 TELLKQIKQH AKPTGDATQR LAHCFAEGLQ ARLAGTGSLV HQSLMAKRTS AVDILQAYQL 420 YMAAICFKKV SFMFSNQTIY NASLGKKKIH IVDYGIQYGF QWPCFLRRIS QREGGPPEVR 480 ITGIDLPQPG FRPTERIDET GRRLSKYAQE FNVPFKYNSI AAAKMESIRK EDLNIDPDEV 540 LFVNCQCHFK NLMDESVVID SPRDIVLSNI RKMQPHVFIH SIVNGSFSAP FFVTRFREAL 600 FYYSALFDVL DATTPRESEQ RLLIEQNIFG RAALNVIACY EGDGYPKLLK L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 2e-38 | 347 | 639 | 24 | 305 | Protein SCARECROW |
5b3h_D | 2e-38 | 347 | 639 | 24 | 305 | Protein SCARECROW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR12G13750.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111522 | 0.0 | AK111522.1 Oryza sativa Japonica Group cDNA clone:J013002M11, full insert sequence. | |||
GenBank | AK121943 | 0.0 | AK121943.1 Oryza sativa Japonica Group cDNA clone:J033107F03, full insert sequence. | |||
GenBank | AL772425 | 0.0 | AL772425.7 Oryza sativa chromosome 12, . BAC OJ1396_C02 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | AL844878 | 0.0 | AL844878.4 Oryza sativa chromosome 12, . BAC OSJNBb0036A19 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | AP014968 | 0.0 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012620 | 0.0 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015620149.1 | 0.0 | scarecrow-like protein 34 | ||||
TrEMBL | A0A0D9Y0N8 | 0.0 | A0A0D9Y0N8_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR12G13750.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP231 | 31 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-122 | GRAS family protein |