PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G13550.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family Dof
Protein Properties Length: 344aa    MW: 35006.9 Da    PI: 8.8918
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G13550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.84.8e-38112169562
           zf-Dof   5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                      +l+cprCdstntkfCy+nnyslsqPr+fCkaCrryWt+GGalrnvPvGgg+r+n k+s
  LPERR12G13550.1 112 TLRCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNTKRS 169
                      679***************************************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-3098165IPR003851Zinc finger, Dof-type
PfamPF027011.3E-31113167IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.385113167IPR003851Zinc finger, Dof-type
PROSITE patternPS013610115151IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MVFSSLPIFL DPPNWTQIQQ QPLHCLLGGG GAGAGDHHHL MPPPSALAPL PISNSVTGDT  60
AVSAPASGGG ISSSSARPPP PATPAAAASS PAVVSMSERA RLARVPLPEP GTLRCPRCDS  120
TNTKFCYFNN YSLSQPRHFC KACRRYWTRG GALRNVPVGG GCRRNTKRSS KKSSSSSSSA  180
TSSRHVGAGG AVAATSSSST TSTSTTATTT SAADVIAGIQ GFPSAAALEA ALQEAGYHHH  240
HNHNHHHGNL QLLQPPPAFL PTGMNGYHFA DGDGGVIADG GFPRGVVASG LLAQLASVKM  300
EEHGVGNGGF VGGHEQYWTG GGGGGGWPAE FLSGFSSSSS GNVL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269|PubMed:12887587}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G13550.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:12887587}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2883491e-76AK288349.1 Oryza sativa Japonica Group cDNA, clone: J090023P19, full insert sequence.
GenBankAL7317841e-76AL731784.3 Oryza sativa chromosome 12, . BAC OSJNBa0016C14 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149681e-76AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008668091.11e-105dof zinc finger protein DOF2.2 isoform X1
SwissprotQ9M2U12e-42DOF36_ARATH; Dof zinc finger protein DOF3.6
TrEMBLA0A0D9Y0K80.0A0A0D9Y0K8_9ORYZ; Uncharacterized protein
STRINGLPERR12G13550.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02460.13e-37Dof family protein