PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G10130.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GRF
Protein Properties Length: 436aa    MW: 46689 Da    PI: 9.2359
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G10130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC74.11.5e-23126170145
              WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                      d+epgrCrRtDGKkWRCsr+++ ++k+CErH++rgr+rsrk++e 
  LPERR12G10130.1 126 DSEPGRCRRTDGKKWRCSRDAVVDQKYCERHINRGRHRSRKHVEG 170
                      689***************************************986 PP
2QLQ58.51.9e-205591137
              QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                     ++FT++Q+++L++Q+l+yK+++an+PvP+ Ll++i++
  LPERR12G10130.1 55 GPFTPTQWMELEHQALIYKHIVANAPVPAGLLLPIRR 91
                     59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.3E-115591IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.8365691IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088807.0E-155690IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.527126170IPR014977WRC domain
PfamPF088799.5E-20128169IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MAMATPTHGS FLLGSGGYPG AQMLSFSSGY SGNAGLERGS SDVTSMQGVL ARVRGPFTPT  60
QWMELEHQAL IYKHIVANAP VPAGLLLPIR RSLHPPVFSH FSSGGILGSS SLGWGSFQLG  120
YSGSADSEPG RCRRTDGKKW RCSRDAVVDQ KYCERHINRG RHRSRKHVEG QSSHAAKPTV  180
AVAPPPLGAS NGKSSGSHGM SHELTKTLAA NLTDPCPNHF NRMLLDKTNL TEHSQDYTNQ  240
RHKPNILQNT KGDNWSEEMS SQADCVVIPA GSLMNTPQSG NVNLMPQQQH SKQSQPNLVQ  300
LHFGNRIHHD DIQLSISIPV ENSNLSTNHK AQIGPAVGIS SNKGNAARPS WVPDSWETSI  360
GGPLGEFFTN TSNASDDKSK SRHPPSLNVV ADGHTTSPQL QSPTGVLQMT NFSSVPSSTV  420
SSPGTASAMA CSLQAW
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G10130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2415570.0AK241557.1 Oryza sativa Japonica Group cDNA, clone: J065178H17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015698579.10.0PREDICTED: growth-regulating factor 7-like
SwissprotQ6AWY20.0GRF7_ORYSJ; Growth-regulating factor 7
TrEMBLA0A0D9XZD00.0A0A0D9XZD0_9ORYZ; Uncharacterized protein
STRINGLPERR12G10130.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42903568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.18e-42growth-regulating factor 1