PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LPERR12G09780.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 144aa MW: 15971.2 Da PI: 10.3653 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 129.8 | 2.1e-40 | 15 | 141 | 1 | 121 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrF+Ptdeelvv+yL++++ + +l+++ i++v+++ ++P+dL p +e+e yfF++++ ky +g+r+nrat +gyWkatgk+k+v LPERR12G09780.1 15 LPPGFRFRPTDEELVVHYLRRRALDAPLPAAVDIPDVRLLAHDPSDLlP--PGWSEQERYFFTCKEAKYVKGRRANRATGDGYWKATGKEKPVA 106 79***************************9666**************43..3447899***********************************9 PP NAM 94 sk.......kgelvglkktLvfykgrapkgektdW 121 ++ ++ +vg+k++Lvfy+g+ p g+ktdW LPERR12G09780.1 107 VAvqspaasQSVVVGMKRSLVFYRGKPPAGKKTDW 141 9888888777777********************** PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-40 | 8 | 141 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 39.69 | 15 | 144 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.6E-21 | 16 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 144 aa Download sequence Send to blast |
METTTTARRA AATALPPGFR FRPTDEELVV HYLRRRALDA PLPAAVDIPD VRLLAHDPSD 60 LLPPGWSEQE RYFFTCKEAK YVKGRRANRA TGDGYWKATG KEKPVAVAVQ SPAASQSVVV 120 GMKRSLVFYR GKPPAGKKTD WETS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-31 | 11 | 141 | 11 | 133 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269|PubMed:24243147}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LPERR12G09780.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015618303.1 | 3e-77 | NAC domain-containing protein 83 | ||||
Swissprot | O22798 | 2e-43 | NAC41_ARATH; NAC domain-containing protein 41 | ||||
TrEMBL | A0A0D9XZ89 | 1e-100 | A0A0D9XZ89_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR12G09780.1 | 1e-101 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6317 | 32 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G13180.1 | 1e-30 | NAC domain containing protein 83 |
Publications ? help Back to Top | |||
---|---|---|---|
|