PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G08420.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 372aa    MW: 40826.9 Da    PI: 4.1317
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G08420.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM63.75.6e-20111362128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk 88 
                      ++GfrF+P++ee+v  yL   ++g++ +e+e v  +  +y ++P+dL +     + +++ ++w++F+ r+         +r a + g+W a+ +
  LPERR12G08420.1  11 ARGFRFNPSQEEVVASYLPTLISGHPsVEIELVTIRQSVYAAHPRDLAAdhrpvARSTNGDRWFYFFMRQGMF------SRgAGAGGTWVASQR 98 
                      68***********************9544433444559*********74466653334556897777776544......3437789******** PP

              NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ke+++  +g ++g  k++ f + + +  ++tdW+m+eyrl
  LPERR12G08420.1  99 AKEIKKDgEGIKIGEVKSFRFKD-DGN--NSTDWLMEEYRL 136
                      *****9877788*********84.333..47********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.15E-2410160IPR003441NAC domain
PROSITE profilePS5100528.52710160IPR003441NAC domain
PfamPF023651.8E-1412136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MDEHGLDYLV ARGFRFNPSQ EEVVASYLPT LISGHPSVEI ELVTIRQSVY AAHPRDLAAD  60
HRPVARSTNG DRWFYFFMRQ GMFSRGAGAG GTWVASQRAK EIKKDGEGIK IGEVKSFRFK  120
DDGNNSTDWL MEEYRLCSGQ EFVNSAGDLE VPVVCRIYVS PRAPPDSAAR QESAAHPPPS  180
PPRSPEESEE SEPPNRDPTP PPAPKASPLK RSASPPPSSA KKIRGPTSRR LMVDSLEEVD  240
DDGFGELEKL SNGDDEPPRN AGDVGDESEV DDDTGEFDWL LKDILIPDDD DILKTLDVFD  300
DPVQKAVGVG DDSEERYNGS EVDDIGEFTR LLQDDNVLDA FDVLDAMAGD PIDKGSGFLE  360
EALTGYGNEI LV
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G08420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9XYT60.0A0A0D9XYT6_9ORYZ; Uncharacterized protein
STRINGLPERR12G08420.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18322799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.17e-09NAC domain containing protein 28