PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G08400.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 330aa    MW: 35559.7 Da    PI: 4.3671
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G08400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM59.89e-19111353128
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk. 88 
                       GfrF+P+ ee+v +yL   + g++   +++ i+++ +y ++P+dL +        +++ ++w++F+ r+       r +r +  g+W a  + 
  LPERR12G08400.1  11 LGFRFNPSPEEVVAYYLPILIGGHPSADTDAcINRASVYAAQPRDLATrfaptpG-STNGDRWFYFFMRQG------RVSRGAGGGTWVALSQg 97 
                      6***********************95555555**************843555432.235568977777654......6789899*****87765 PP

              NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +k+++++ +g ++g  +t+ f + + +  + tdW+m+ey+l
  LPERR12G08400.1  98 TKDIKKNrEGIKIGEVNTFRFMD-DGN--NLTDWLMEEYHL 135
                      788877657888*********94.333..47********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100526.0249159IPR003441NAC domain
SuperFamilySSF1019417.72E-2210159IPR003441NAC domain
PfamPF023656.1E-1312135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MNRDLGFLIS LGFRFNPSPE EVVAYYLPIL IGGHPSADTD ACINRASVYA AQPRDLATRF  60
APTPGSTNGD RWFYFFMRQG RVSRGAGGGT WVALSQGTKD IKKNREGIKI GEVNTFRFMD  120
DGNNLTDWLM EEYHLCGGQQ FVNSAGDFEV PVVCRIYVSP TAPPDSAARQ ESAAHRPPSP  180
PPPPSPEEPE PPNRDPTPPP PPPSPQASPQ KRSASPPPPS SAKIRGPTSR RVMAAAPPPH  240
PVAPLVNSLE VVDDGFGELE KLSNGDDEAP RNAGDVGDPS EVNDDTGEFA WLLEDVLIPD  300
DENILETLDV LDGMAGDPID KGFLKMALTA
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G08400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619209.18e-64proteoglycan 4
TrEMBLA0A0D9XYT40.0A0A0D9XYT4_9ORYZ; Uncharacterized protein
STRINGLPERR12G08400.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18322799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.14e-11NAC domain containing protein 50