PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR12G08390.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NAC | ||||||||
Protein Properties | Length: 377aa MW: 41742.1 Da PI: 4.6603 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 67.3 | 4.4e-21 | 10 | 131 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +G+rF+P+ +e+v++y+ + ++ + + i+ +d+y +eP+dL + +++++ + +fF++ ++ + + +ra+ g+W ++ + k+ LPERR12G08390.1 10 EAGYRFSPSPQEVVTFYIPRLFANITDPY---IHIADVYAAEPKDLARdfapVASSSNGDRWFFTQCKRVK---GKVSRAAGGGTWVSQSS-KD 96 68*******************99998666...9999**********8546653333444667888888865...4799999******8865.99 PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++g+++g k + f kg +++ +tdW+m+ey+l LPERR12G08390.1 97 IKNREGKKIGETKNFRFKKGANKE--NTDWLMEEYHL 131 ***9**************887777..9********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.63E-23 | 7 | 150 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 26.996 | 9 | 150 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-13 | 11 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MASNLDLLLE AGYRFSPSPQ EVVTFYIPRL FANITDPYIH IADVYAAEPK DLARDFAPVA 60 SSSNGDRWFF TQCKRVKGKV SRAAGGGTWV SQSSKDIKNR EGKKIGETKN FRFKKGANKE 120 NTDWLMEEYH LVGGKQAGDV EPVVCRIYVS PRAAPDSAAH QESAALPPRP QELAPPLAPA 180 PAMITKQQQQ AAPLKRPAVS ASVAETLPCS KKMRRPVSAK RVMAPPPPLP MPTYLIDPFK 240 QPPQPLPQEN SNQKLMMDAA PFLDKSGAER DDDVDDFAEI EQQIFSYGEE IAGRVALAPT 300 VKQTIAPNDD EPHEFCDEDM DELMKLMDDK IEEAADAGNG TEGDDMGEFA RFLEDGLLSN 360 DDKSLDQFEK EFLKVFH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR12G08390.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619212.1 | 5e-79 | vegetative cell wall protein gp1 | ||||
TrEMBL | A0A0D9XYT3 | 0.0 | A0A0D9XYT3_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR12G08390.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1832 | 27 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 7e-13 | NAC domain containing protein 90 |