PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR12G06220.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

NF-YC

Protein Properties

Length: 359aa MW: 39883.9 Da PI: 5.1135

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR12G06220.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	86.3	3.3e-27	7	108	1	99
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 q+ fw++q ie +df +h++P+ar+k+i+ +++ m++ + P++lsk celf+ el++r+w a++ +r + +dia+a+++t+ +df LPERR12G06220.1 7 QMDEFWSNQqkdIEAIKDFSDHAIPMARLKNIVSSQKGNMMMTFDMPAFLSKMCELFVQELAIRAWACAQSHNRCIILDTDIAEAIASTECYDF 100 7889*998999***************************************************************************** PP NF-YC 92 lvdivprd 99 lvd+ ++ LPERR12G06220.1 101 LVDTLHKH 108 *98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.31E-15	16	123	IPR009072	Histone-fold
Pfam	PF00125	1.2E-8	22	92	IPR007125	Histone H2A/H2B/H3
Gene3D	G3DSA:1.10.20.10	3.2E-18	31	106	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MPMSHQQMDE FWSNQQKDIE AIKDFSDHAI PMARLKNIVS SQKGNMMMTF DMPAFLSKMC 60 ELFVQELAIR AWACAQSHNR CIILDTDIAE AIASTECYDF LVDTLHKHRV KHNSTPRSTL 120 VTKRFRLLDQ PSTSYQPGQD QLPCFNSTYT SNIHVNPNFI PPTPQYRPFS FPSSPQKAPT 180 PIMNVSMLSI HNIARGLGLQ GNNINTIVPN NTVDCSSPIV LSGVTSPTLL KLTEASLNTP 240 NSQSCKYMMD MINSIDANGS STSNIVVANQ ASLALRDNFN PSFCLPSSSP LLPSNNNEME 300 GVGISDTMHV ASDGVDATTI VLDGQQEQHE SEANVDHPHQ NEIYGSIDVE TIQCYYYTW

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MPMSHQQMDE FWSNQQKDIE AIKDFSDHAI PMARLKNIVS SQKGNMMMTF DMPAFLSKMC  60
ELFVQELAIR AWACAQSHNR CIILDTDIAE AIASTECYDF LVDTLHKHRV KHNSTPRSTL  120
VTKRFRLLDQ PSTSYQPGQD QLPCFNSTYT SNIHVNPNFI PPTPQYRPFS FPSSPQKAPT  180
PIMNVSMLSI HNIARGLGLQ GNNINTIVPN NTVDCSSPIV LSGVTSPTLL KLTEASLNTP  240
NSQSCKYMMD MINSIDANGS STSNIVVANQ ASLALRDNFN PSFCLPSSSP LLPSNNNEME  300
GVGISDTMHV ASDGVDATTI VLDGQQEQHE SEANVDHPHQ NEIYGSIDVE TIQCYYYTW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	1e-16	15	105	3	93	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR12G06220.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015621624.1	1e-147	uncharacterized protein LOC4324193 isoform X3
TrEMBL	A0A0D9XY37	0.0	A0A0D9XY37_9ORYZ; Uncharacterized protein
STRING	LPERR12G06220.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9174	21	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63470.2	9e-25	nuclear factor Y, subunit C4