PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR12G06110.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

NF-YC

Protein Properties

Length: 419aa MW: 46573.1 Da PI: 4.3777

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR12G06110.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	88.2	8.5e-28	7	108	1	99
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 q+ fw++q ie +df +h++P+ar+kki+ +++ m++ ++P++lsk celf+ el++r+w a++ +r + +dia+a+++t+ +df LPERR12G06110.1 7 QMDEFWSNQqkdIEAIKDFSDHAIPMARLKKIVSSQKGNMMMTFDIPAFLSKMCELFVQELAIRAWACAQSHNRCIILDTDIAEAIASTECYDF 100 7889*998999***************************************************************************** PP NF-YC 92 lvdivprd 99 l+d+ ++ LPERR12G06110.1 101 LIDTLHKH 108 *98776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	3.14E-16	30	106	IPR009072	Histone-fold
Pfam	PF00808	1.4E-8	30	92	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.0E-18	31	106	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MPMSHQQMDE FWSNQQKDIE AIKDFSDHAI PMARLKKIVS SQKGNMMMTF DIPAFLSKMC 60 ELFVQELAIR AWACAQSHNR CIILDTDIAE AIASTECYDF LIDTLHKHRA KHNSTPRSTH 120 VTKRFRLLDQ PSTSYQPGQD QLPCFNSKYT SDIHVNPNFI PPIPQFRPFS FPSLPQKAPT 180 TIVNVSMLSI HNIARGLGLQ GNNINTIVPN NIVDCSSPIV LSDVTSPTLL ELTEASLNTP 240 NSQSCKYMMD MINSNDANGS STSNIVVANQ ASLDLPDNFN PSFCLPSSSP LLPSNNNEME 300 GVGISDTMHV ASDVVDATTI VLDGQQEQHE NEANVDHPHQ NEIYGSIDFE TINATTVYGN 360 KYSISWDELG MTDDFLLDNF VEELQVGKDN VFDARIVLDK DPCDSDTMFS NPSTNNGDN

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MPMSHQQMDE FWSNQQKDIE AIKDFSDHAI PMARLKKIVS SQKGNMMMTF DIPAFLSKMC  60
ELFVQELAIR AWACAQSHNR CIILDTDIAE AIASTECYDF LIDTLHKHRA KHNSTPRSTH  120
VTKRFRLLDQ PSTSYQPGQD QLPCFNSKYT SDIHVNPNFI PPIPQFRPFS FPSLPQKAPT  180
TIVNVSMLSI HNIARGLGLQ GNNINTIVPN NIVDCSSPIV LSDVTSPTLL ELTEASLNTP  240
NSQSCKYMMD MINSNDANGS STSNIVVANQ ASLDLPDNFN PSFCLPSSSP LLPSNNNEME  300
GVGISDTMHV ASDVVDATTI VLDGQQEQHE NEANVDHPHQ NEIYGSIDFE TINATTVYGN  360
KYSISWDELG MTDDFLLDNF VEELQVGKDN VFDARIVLDK DPCDSDTMFS NPSTNNGDN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	2e-16	15	105	3	93	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR12G06110.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015635714.1	1e-173	uncharacterized protein LOC4326495 isoform X1
Refseq	XP_015635732.1	1e-173	uncharacterized protein LOC4326495 isoform X3
TrEMBL	A0A0D9XY24	0.0	A0A0D9XY24_9ORYZ; Uncharacterized protein
STRING	LPERR12G06110.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9174	21	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63470.2	2e-23	nuclear factor Y, subunit C4