PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G05300.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family DBB
Protein Properties Length: 211aa    MW: 21960.6 Da    PI: 6.2624
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G05300.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.91.3e-05544638
         zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38
                     C+ ++  e+   C  ++  lC+ C  + H+        H+
  LPERR12G05300.1  5 CDACSAAEAAVLCCADEAALCRRCDAAVHSAnrlagkhHR 44
                     ******99*********************65778888555 PP
2zf-B_box27.37.2e-096097337
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg...H 37
                     +++C+ ++ek   +fC d++ llC++C l+ H     H
  LPERR12G05300.1 60 APTCDICQEKTGYFFCLDDRALLCRSCDLAVHTAttpH 97
                     689****************************9556663 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.456147IPR000315B-box-type zinc finger
SMARTSM003363.0E-5547IPR000315B-box-type zinc finger
CDDcd000213.17E-4547No hitNo description
SMARTSM003364.4E-1158106IPR000315B-box-type zinc finger
PROSITE profilePS501199.49958102IPR000315B-box-type zinc finger
PfamPF006431.6E-66095IPR000315B-box-type zinc finger
CDDcd000211.47E-763106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MKIGCDACSA AEAAVLCCAD EAALCRRCDA AVHSANRLAG KHHRLALLLP SSAAAGDHHA  60
PTCDICQEKT GYFFCLDDRA LLCRSCDLAV HTATTPHAAA HRRFLITGVR IGDSVANAAA  120
DVIASPSISI SSNIAGPASI SNRHAVTVAA AGGNIGHRSP PAMFRQDDGV APPPEQQQWP  180
WSDVFADDGG DMEQQCCYTG ISEPHSSSLT G
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G05300.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0678201e-117AK067820.1 Oryza sativa Japonica Group cDNA clone:J013117D12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618519.12e-69B-box zinc finger protein 23
SwissprotQ9SYM27e-43BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A0D9XXT21e-151A0A0D9XXT2_9ORYZ; Uncharacterized protein
STRINGLPERR12G05300.11e-152(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121512528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.11e-33light-regulated zinc finger protein 1